DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta4 and Psmb10

DIOPT Version :10

Sequence 1:NP_609804.1 Gene:Prosbeta4 / 34999 FlyBaseID:FBgn0032596 Length:201 Species:Drosophila melanogaster
Sequence 2:NP_001020808.1 Gene:Psmb10 / 291983 RGDID:1307428 Length:273 Species:Rattus norvegicus


Alignment Length:166 Identity:43/166 - (25%)
Similarity:69/166 - (41%) Gaps:12/166 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TLLGIKGPDFVMLAADTTHARSIIVMKEDQNKIHKVSDSLLISTVGESGDTEQFTEFISKNIALY 67
            |:.|:...|.|:|.|||......:|..:...|||.::..:.....|.:.|||..|...:..:.|:
  Rat    41 TIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELH 105

  Fly    68 KMRNGYDLSPRESAHFTRKNLAEYLRSRTPYQVFMFVAGYDPNAGPELTFI----DYLANALPVN 128
            .:..|.:..........|:.|..|   :......:.|.|.|.| ||:|..:    .|  :.||..
  Rat   106 ALSTGREPRVATVTRILRQTLFRY---QGHVGASLIVGGVDLN-GPQLYSVHPHGSY--SRLPFT 164

  Fly   129 YAGHGYGAIFASSIYDRYWHPNITQAEAYDVFKKCI 164
            ..|.|..|..| .:.||: .||:|...|.::..:.|
  Rat   165 ALGSGQDAAVA-LLEDRF-QPNMTLEAAQELLVEAI 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta4NP_609804.1 proteasome_beta_type_2 1..192 CDD:239727 43/166 (26%)
Psmb10NP_001020808.1 proteasome_beta_type_7 40..226 CDD:239732 43/166 (26%)
Pr_beta_C 231..267 CDD:463597
Blue background indicates that the domain is not in the aligned region.

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