DRSC/TRiP Functional Genomics Resources

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Protein Alignment VhaSFD and VMA13

DIOPT Version :9

Sequence 1:NP_723992.1 Gene:VhaSFD / 34997 FlyBaseID:FBgn0027779 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_015361.1 Gene:VMA13 / 856148 SGDID:S000006240 Length:478 Species:Saccharomyces cerevisiae


Alignment Length:567 Identity:146/567 - (25%)
Similarity:231/567 - (40%) Gaps:152/567 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IAATSVLQQQA------ADIRTRTINWASYMQSQMISEEDYKAISAL----------DKSRASFL 63
            :.||.:|....      :.||:|::.|.:..:|:.:||.|.....||          |...:|..
Yeast     1 MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGLSSSNN 65

  Fly    64 AQNSSQV-VKTLLNLVSHLS-------KDSTIQYILVLL------DD---LLQEDRSRVDLFHDT 111
            |.:..:| .|||:.|:..||       |.|....|..||      ||   ..|||..:::...|.
Yeast    66 AHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDV 130

  Fly   112 AGKLKQCIWGPFLNLLNRQDGFIVNMSSRILAKFACWGHETMPKSDLNFYLQFLKDQLASNGLAY 176
            :.|      |.|..:|  ..||  |:.| :|.:......:.:.|...|..|..:...:......|
Yeast   131 SLK------GDFQTVL--ISGF--NVVS-LLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCY 184

  Fly   177 -----LQEMAQLAKRTQTILVHTHGKDKDHHGHQYSPTLAQLQQQHELAERANESYREVGVGSDH 236
                 |||:|.:.:....|.:|.         .::.|||.::.|      ||.:|          
Yeast   185 VCIRLLQELAVIPEYRDVIWLHE---------KKFMPTLFKILQ------RATDS---------- 224

  Fly   237 QQQDGKCVIPNNEYIQSVARCLQMMLRVDEYRFAFVGVDGISTLIRILSTRVNFQVQYQLIFCLW 301
                                  |:..|:                :...|..:..|:||..:..:|
Yeast   225 ----------------------QLATRI----------------VATNSNHLGIQLQYHSLLLIW 251

  Fly   302 VLTFNPLLAAKMNKFSVIPILADIL------SDCAKEKVTRIILAVFRNLIEKPEDSSVAKDHCI 360
            :|||||:.|.::    |...|:|.|      ....||||:|:.:::.....     |:..|.|  
Yeast   252 LLTFNPVFANEL----VQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCC-----STRVKQH-- 305

  Fly   361 AMVQCKVLKQLSI----------LEQRRFDDEDITADVEYLSEKLQNSVQDLSSFDEYATEVRSG 415
                .||:|||.:          |.:|::.||::..|:..|.|.|:|..|:|:|||||..|:.|.
Yeast   306 ----KKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSK 366

  Fly   416 RLEWSPVHKSAKFWRENAQRLNEKNYELLRILVHLLE---------TSKDAIILSVACFDIGEYV 471
            .|.|||.|....||.:|.....:.||::.|.|:.||:         ..::.||:.||..||...|
Yeast   367 LLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVV 431

  Fly   472 RHYPRGKHVLEQLGGKQIVMQHLGHEDPNVRYEALLAVQKLMVHNWE 518
            ...|....||::.|||..:|:.|.|.|..|:||||.|.|.::.:.::
Yeast   432 ELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VhaSFDNP_723992.1 VATPase_H 19..518 CDD:238159 144/561 (26%)
VMA13NP_015361.1 VMA13 1..478 CDD:227556 146/565 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343030
Domainoid 1 1.000 84 1.000 Domainoid score I1922
eggNOG 1 0.900 - - E1_COG5231
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 134 1.000 Inparanoid score I1224
Isobase 1 0.950 - 0 Normalized mean entropy S1675
OMA 1 1.010 - - QHG54625
OrthoFinder 1 1.000 - - FOG0004292
OrthoInspector 1 1.000 - - oto100308
orthoMCL 1 0.900 - - OOG6_101800
Panther 1 1.100 - - LDO PTHR10698
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1635
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.780

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