DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grp and CIPK1

DIOPT Version :9

Sequence 1:NP_477011.1 Gene:grp / 34993 FlyBaseID:FBgn0261278 Length:512 Species:Drosophila melanogaster
Sequence 2:NP_566580.1 Gene:CIPK1 / 821016 AraportID:AT3G17510 Length:444 Species:Arabidopsis thaliana


Alignment Length:506 Identity:128/506 - (25%)
Similarity:223/506 - (44%) Gaps:115/506 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 WTLAQTLGEGAYGEVKLLINRQTGEAVAMKMVDLKKHPDAANS--VRKEVCIQKMLQDKHILRFF 84
            :.|.:|||||.:|:||...:..:|.:.|:|::|..:..|...|  :::|:...|||:..||:|..
plant    20 YELGRTLGEGNFGKVKFAKDTVSGHSFAVKIIDKSRIADLNFSLQIKREIRTLKMLKHPHIVRLH 84

  Fly    85 GKRSQGSVEYIFLEYAAGGELFDRIEPDVGMPQHEAQRYFTQLLSGLNYLHQRGIAHRDLKPENL 149
            ...:..:...:.:|...||||||||..:..:.:.:.::.|.||:.|::|.|.:|:.|||||.||:
plant    85 EVLASKTKINMVMELVTGGELFDRIVSNGKLTETDGRKMFQQLIDGISYCHSKGVFHRDLKLENV 149

  Fly   150 LLDEHDNVKISDFGMATM---FRCKGKERLLDKRCGTLPYVAPEVL-QKAYHAQPADLWSCGVIL 210
            |||...::||:|||::.:   ||..|   ||...||:..||||||| .:.|....:|:|||||||
plant   150 LLDAKGHIKITDFGLSALPQHFRDDG---LLHTTCGSPNYVAPEVLANRGYDGAASDIWSCGVIL 211

  Fly   211 VTMLAGELPWDQPSTNCTEFTNWRDNDHWQLQTPWSK-----------LDTLAISLLRKLLATSP 264
            ..:|.|.||:|..:                |...:.|           |...|.::::::|..:|
plant   212 YVILTGCLPFDDRN----------------LAVLYQKICKGDPPIPRWLSPGARTMIKRMLDPNP 260

  Fly   265 GTRLTLEKTLDHKWCNMQFA------DNERSYDLVDSAAALEICSPKAKRQRLQSSAHLSNGLDD 323
            .||:|:......:|..:::.      |:|...|                                
plant   261 VTRITVVGIKASEWFKLEYIPSIPDDDDEEEVD-------------------------------- 293

  Fly   324 SISRNYCSQPMPTMRSDDDFNVR-LGSGRSKEDGGDRQTLAQEARLSYSFSQPALLDDLLLATQM 387
                          ..||.|::: |||...|  |.|..|:....:|   ....:.||    .:..
plant   294 --------------TDDDAFSIQELGSEEGK--GSDSPTIINAFQL---IGMSSFLD----LSGF 335

  Fly   388 NQTQNASQNYFQRLVRRMTRFFVTTRWDDTIKRLVGTIERLGGYTCKFGDDGVVTVSTVDRN--- 449
            .:.:|.|:        |..||...:...|.::::...:..:|....|  ....:.|...:||   
plant   336 FEQENVSE--------RRIRFTSNSSAKDLLEKIETAVTEMGFSVQK--KHAKLRVKQEERNQKG 390

  Fly   450 KLRLVFKAHIIEMDGKI-LVDCRLSKGCGLEFKRRFIKIKNALEDIVLKGP 499
            ::.|...|.:.|:...: :|:.|.|.|....:::.:.::   |:|:....|
plant   391 QVGLSVTAEVFEIKPSLNVVELRKSYGDSCLYRQLYERL---LKDVGTSSP 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grpNP_477011.1 STKc_Chk1 20..279 CDD:270971 90/273 (33%)
S_TKc 22..278 CDD:214567 90/272 (33%)
CIPK1NP_566580.1 STKc_SnRK3 19..274 CDD:271133 90/272 (33%)
CIPK_C 319..432 CDD:213380 22/132 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 209 1.000 Inparanoid score I1258
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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