DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grp and Chek1

DIOPT Version :9

Sequence 1:NP_477011.1 Gene:grp / 34993 FlyBaseID:FBgn0261278 Length:512 Species:Drosophila melanogaster
Sequence 2:NP_536325.1 Gene:Chek1 / 140583 RGDID:620545 Length:476 Species:Rattus norvegicus


Alignment Length:499 Identity:237/499 - (47%)
Similarity:322/499 - (64%) Gaps:40/499 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 FVEGWTLAQTLGEGAYGEVKLLINRQTGEAVAMKMVDLKKHPDAANSVRKEVCIQKMLQDKHILR 82
            |||.|.|.|||||||||||:|.:||.|.||||:|:||:|:..|...:::||:||.|||..:::::
  Rat     5 FVEDWDLVQTLGEGAYGEVQLAVNRITEEAVAVKIVDMKRAIDCPENIKKEICINKMLNHENVVK 69

  Fly    83 FFGKRSQGSVEYIFLEYAAGGELFDRIEPDVGMPQHEAQRYFTQLLSGLNYLHQRGIAHRDLKPE 147
            |:|.|.:|:::|:||||.:|||||||||||:|||:.:|||:|.||::|:.|||..||.|||:|||
  Rat    70 FYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEQDAQRFFHQLMAGVVYLHGIGITHRDIKPE 134

  Fly   148 NLLLDEHDNVKISDFGMATMFRCKGKERLLDKRCGTLPYVAPEVL-QKAYHAQPADLWSCGVILV 211
            ||||||.||:||||||:||:||...:||||:|.||||||||||:| :|.:||:|.|:||||::|.
  Rat   135 NLLLDERDNLKISDFGLATVFRHNNRERLLNKMCGTLPYVAPELLKRKEFHAEPVDVWSCGIVLT 199

  Fly   212 TMLAGELPWDQPSTNCTEFTNWRDNDHWQLQTPWSKLDTLAISLLRKLLATSPGTRLTLEKTLDH 276
            .||||||||||||.:|.|:::|::...:  ..||.|:|:..::||.|:|..:|..|:|:......
  Rat   200 AMLAGELPWDQPSDSCQEYSDWKEKKTY--LNPWKKIDSAPLALLHKILVENPSARITIPDIKKD 262

  Fly   277 KWCNMQFADNERSYDLVDSAAALEICSPKAKRQRLQSS--AHLSNGLDDSISRNYCSQPMPTMRS 339
            :|.|...                   :..|||.|..|.  :..|:|....|..|....|:.:..|
  Rat   263 RWYNKPL-------------------NRGAKRPRATSGGMSESSSGFSKHIHSNLDFSPINSGSS 308

  Fly   340 DDDFNVRLGS-------GRSKEDGGDRQT--LAQEARLSYSFSQPALLDDLLLATQMNQTQNASQ 395
            ::  ||:..|       |.|..|.|....  |.|    ..|||||...|.:|:.:|:..|..:||
  Rat   309 EE--NVKFSSSQPEPRTGLSLWDTGPSNVDKLVQ----GISFSQPTCPDHMLVNSQLLGTPGSSQ 367

  Fly   396 NYFQRLVRRMTRFFVTTRWDDTIKRLVGTIERLGGYTCKFGDDGVVTVSTVDRNKLRLVFKAHII 460
            |.:||||:||||||.....|.:.:.|..|.|:| ||..|......|||||:||...:|:||.:::
  Rat   368 NPWQRLVKRMTRFFTKLDADKSYQCLKETFEKL-GYQWKKSCMNQVTVSTMDRRNNKLIFKINLV 431

  Fly   461 EMDGKILVDCRLSKGCGLEFKRRFIKIKNALEDIVLKGPTTWPI 504
            |||.|||||.|||||.||||||.|:|||..|.|||......:|:
  Rat   432 EMDEKILVDFRLSKGDGLEFKRHFLKIKGKLSDIVSSQKVWFPV 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grpNP_477011.1 STKc_Chk1 20..279 CDD:270971 145/259 (56%)
S_TKc 22..278 CDD:214567 144/256 (56%)
Chek1NP_536325.1 Interaction with CLSPN. /evidence=ECO:0000250 1..265 147/261 (56%)
STKc_Chk1 7..265 CDD:270971 145/259 (56%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 267..329 16/82 (20%)
Autoinhibitory region. /evidence=ECO:0000250 391..476 45/86 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 325 1.000 Domainoid score I1162
eggNOG 1 0.900 - - E1_KOG0590
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H975
Inparanoid 1 1.050 438 1.000 Inparanoid score I1626
OMA 1 1.010 - - QHG48669
OrthoDB 1 1.010 - - D343319at33208
OrthoFinder 1 1.000 - - FOG0001125
OrthoInspector 1 1.000 - - oto96384
orthoMCL 1 0.900 - - OOG6_104812
Panther 1 1.100 - - LDO PTHR24343
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2646
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

Return to query results.
Submit another query.