DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trpgamma and trpc2a

DIOPT Version :9

Sequence 1:NP_001137830.2 Gene:Trpgamma / 34991 FlyBaseID:FBgn0032593 Length:1188 Species:Drosophila melanogaster
Sequence 2:XP_017206723.1 Gene:trpc2a / 559914 ZFINID:ZDB-GENE-130530-602 Length:855 Species:Danio rerio


Alignment Length:846 Identity:274/846 - (32%)
Similarity:424/846 - (50%) Gaps:134/846 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 KFLLAVERGDMA----------GTRRMLQKAQDTEYINVNCVDPLGRTALLMAI--DNENLEMVE 136
            :.:||::.|:||          |..|.|.:::|.          |.|.||.::|  .:|:: |..
Zfish    22 ELILAIQEGNMAWVDSLLSLGDGIIRQLDESEDR----------LWREALNLSIRLGSEDI-MTS 75

  Fly   137 LLINYNVDTK---DALLHSISEEFVEAVEVLLDHENVTFHSEGN----HSWESA----SEDTSTF 190
            ||:....|.:   :|||.::.......|:.|||..::   .:||    .|:..|    |.|.|.|
Zfish    76 LLLGVKFDFRQIHEALLVAVDTNQPRFVKHLLDRLDL---EKGNKMDVRSFSMAIFDHSIDDSQF 137

  Fly   191 TPDITPLILAAHRDNYEIIKILLDRGAVLPMPHDVRCGCDECVQSRQEDSLRHSRSRINAYRALA 255
            .|.:|||.||..:|.|||:.:|..||..:|:||.:.|.|.||...||.|.|:.|.||||.||.:|
Zfish   138 APGVTPLTLACQKDLYEIVMMLTQRGHDIPLPHAISCTCLECNNGRQYDLLKFSLSRINTYRGIA 202

  Fly   256 SPSLIALSSKDPILTAFELSWELRRLSFLEHEFKNEYQELRKQCQDFATALLDHTRTSHELEILL 320
            |.:.::::|:|.:|:||.||.|||:||..|.|||.:|..|.:.||:||..||...|...|:..:|
Zfish   203 SRAYLSITSEDAMLSAFHLSKELRKLSKKEPEFKPQYLALEELCQEFAVELLGMCRNQSEVSTIL 267

  Fly   321 N--------HDPTGPVYEHGERMHLNRLKLAIKLRQKKFVAHSNVQQLLASIWYEGLPGFRRKNM 377
            |        .:.....:|.| ..:|.||:||:...||:||.|...||:|:|||...|.|:|....
Zfish   268 NSAEGDSEDEELDEQTFEEG-IPNLARLRLAVNYNQKQFVTHPICQQVLSSIWCGSLSGWRGSRT 331

  Fly   378 ALQAVDIIRIGIMFPIFSLAYILAPYSSIGQTMRKPFIKFICHSASYFTFLFLLMLASQRIETFI 442
            ..:.:..:.|.:..|:..|.|.:||.|.:|:.::.|.|||:.|||||..||..|:..|..:|.:.
Zfish   332 TWKLLVSLGIFLTMPVLCLIYWIAPKSKLGKLLKVPVIKFLLHSASYMWFLIALLTESIFMEIYR 396

  Fly   443 GGWFFADSSGMLNTMEELPTKRGAKPTFIEWLILAWVSGLIWSEVKQLWDVGLQEYLNDMWNVID 507
            ..:...:.:.:.|::.                 :.||:|..|.|.|::|..||:.|..|:||::|
Zfish   397 TEFASRNQNILHNSLH-----------------MVWVAGFFWFECKEVWIEGLKSYFLDLWNILD 444

  Fly   508 FVTNSLYVATVALRVV----SFFQVQKEMIYN--SHATDLPRERWDAWDPMLISEGLFSAANIFS 566
            .:..|:|:|:..||::    .:|..|......  .:.|:..||.|...||.||:|.||:..::.|
Zfish   445 MMVLSMYLASFTLRILIMLKGYFLCQDSSTQELCDYFTNTVRENWRQEDPQLIAETLFAVTSMLS 509

  Fly   567 SLKLVYIFSVNPHLGPLQVSLSRMVMDIMKFFFLYVLVLFAFGSGLNQLLWYYADLEKKRCPEVS 631
            ..:|.||...:..||.||:|:.||:.|:|:|.|:.:::..||..|:|.:...|.         :|
Zfish   510 FTRLAYILPAHESLGTLQISMGRMIDDMMRFMFILMIIGTAFLCGINNIYVPYV---------IS 565

  Fly   632 PMSALLNMNGTNDPNACIVWRRFSNLFETTQTLFWAVFGL-----IDLDSFELDGIKIFTRFWGM 691
            |....||                    ||...|||.:||:     :|:..:.|      ..|.|.
Zfish   566 PHLGRLN--------------------ETFNFLFWTMFGMANQGYVDMPDYAL------AEFVGR 604

  Fly   692 LMFGTYSVINIVVLLNLLIAMMNHSYQLISERADVEWKFARSKLWISYFEEGGTCPPPFNIIPTP 756
            :.:|.::::.::||||:||||:::|:|.|.:.||||||||||||::|||.||.|.|.||||||:|
Zfish   605 IFYGIFTLLIVIVLLNMLIAMISNSFQRIEDDADVEWKFARSKLYLSYFREGLTMPVPFNIIPSP 669

  Fly   757 KSIWYAIKWMRRVF-----CSGSSAARREHLKTIRRKAQ-----QASDRDFKYQQIMRNLVRRYV 811
            |:.:|.   :|.:|     |....|.....:.::...|.     |...|.....|:.:.||.||:
Zfish   670 KAFFYI---LRGIFQKICCCCQKKAPEYPPITSVSSNAMNSGGGQGEGRVPYRLQVTKALVHRYI 731

  Fly   812 TVEQRKAESQGVTEDDV----NEIKQDISAFRCELVEI---LK--NSG-MDTNVTAGQGGGGGKK 866
            ...:|:.|..  |..||    .|:.:.:.....|:.:.   ||  |.| .|.....|:...|.|.
Zfish   732 EAARREFEES--TRKDVGNRITELNKVVGRLHTEMKDFQQKLKWQNKGEPDQANILGKYIKGAKN 794

  Fly   867 N 867
            |
Zfish   795 N 795

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpgammaNP_001137830.2 trp 77..841 CDD:273311 264/812 (33%)
ANK 113..>217 CDD:238125 37/116 (32%)
ANK repeat 118..147 CDD:293786 10/33 (30%)
ANK repeat 175..217 CDD:293786 20/49 (41%)
TRP_2 227..286 CDD:285535 29/58 (50%)
RRT14 <778..892 CDD:293680 24/105 (23%)
trpc2aXP_017206723.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000660
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2373
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.940

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