DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trpgamma and trpn1

DIOPT Version :9

Sequence 1:NP_001137830.2 Gene:Trpgamma / 34991 FlyBaseID:FBgn0032593 Length:1188 Species:Drosophila melanogaster
Sequence 2:NP_899192.1 Gene:trpn1 / 368273 ZFINID:ZDB-GENE-030728-7 Length:1614 Species:Danio rerio


Alignment Length:933 Identity:205/933 - (21%)
Similarity:331/933 - (35%) Gaps:263/933 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 SAEKKLGSESSG--SGHIAV---QIEPARRVKRHSIHGMMEEENTIRPHQEI-RQLTLEEKKFL- 86
            |...|:.|..:|  :.|:|.   |:...|.:.......:..|..||....:| ||..|.|..|. 
Zfish   837 SVPLKIQSSKTGFTALHVAASFGQMNFVREILTKVPATIRSEFPTISGKDDIKRQQPLAESGFTP 901

  Fly    87 --LAVERGDMAGTRRMLQKAQDTEYINVNC--------VDPLGRTALLMAIDNENLEMVELLINY 141
              ||.:.|..:..|.:|           ||        .:..|.:.|.:|..:.:..:|.||:: 
Zfish   902 LHLASQSGHESVVRLLL-----------NCPGVQADAETNIQGSSPLHLAAQSGHTAVVGLLLS- 954

  Fly   142 NVDTKDALLHSISEEFVEAVEVLLDHENVTF-------HSEGNHSWESASEDTSTFTPDITPLIL 199
               ...:|||........|:.:...|.:|..       .:|.||:      |.|.:    |.|..
Zfish   955 ---RSSSLLHQADRRGRSALHLAAAHGHVDMVRVLLGQGAEINHT------DMSGW----TALHY 1006

  Fly   200 AAHRDNYEIIKILLDRGAVLPMPHDVRCGCDEC----------VQSRQEDS----LRHSRSRINA 250
            ||.....|::..|::.||         ..|.||          .|...|.:    ||..:   |.
Zfish  1007 AAEAGCLEVLLFLVESGA---------SACAECHGGRTPLQYAAQQNHESAVIFLLRREK---NT 1059

  Fly   251 YRALASPSLI------------------ALSSKDPILTAFELSWELRRLSFLEHEFKNEYQELRK 297
            .|.|.....|                  .|.:..|:.||..||..|...:..|.|...:.|....
Zfish  1060 LRLLDDKKFIFNLMVCGRMNDNLSLEELVLHTSAPLDTAVRLSRALTLCALREKERSVDLQAAAH 1124

  Fly   298 QCQDFATALLDHTRTSHELEILLNHDPTGPVYEHGERMHLNRLKLAIKLRQKKFVAHSNVQQLLA 362
            .|:..|:.||..:.::..     .....||:....:...|:.|...|:.|||..|:...||..|.
Zfish  1125 HCELMASDLLSLSASAGG-----QGAGAGPILRALDHRGLSVLDCLIEGRQKGVVSQPAVQTYLT 1184

  Fly   363 SIWYEGLPGFRRKNMALQAVDIIRIGIMF-------PIFSLAYILAPYSSIGQTMRKPFIKFICH 420
            .:|..||..           |..:|.::|       |::.|  :..|.:....|:  |.:||:.|
Zfish  1185 EVWCGGLQW-----------DSWKILLLFCCLLLCPPLWLL--LALPLTHSFNTI--PIVKFMSH 1234

  Fly   421 SASYFTFLFLLMLASQRIETFIGGWFFADSSGMLNTMEELPTKRGAKPTFIEWLILAWVSGLIWS 485
            ..|:   :|||.|       ||....:...|.:        ::....|::.|.|:|.|:.|::.|
Zfish  1235 LVSH---IFLLTL-------FILTIVYPPVSPL--------SQARLMPSWSECLLLIWLCGMLVS 1281

  Fly   486 EVKQLWD-VGLQEYLNDMWNVIDFVTNSLYVATVALRVVSFFQVQKEMIYNSHATDLPRERWDAW 549
            |:....: .||      .|  |..:......|.:...:::.|                 .:|  |
Zfish  1282 ELTFPGERTGL------AW--IRLLLLGFSAAALLCHLLAVF-----------------TQW--W 1319

  Fly   550 DP-----MLISEGLFSAANIFSSLKLVYIFSVNPHLGPLQVSLSRMVMDIMKFFFLYVLVLFAFG 609
            .|     :.....|.:.|.....::|:...:.:...||..:.:..::.|:.:|..:.:|...||.
Zfish  1320 PPTHLHCLFARNVLLAVAMTLGFIQLLEFLTFHHLFGPWAIIIRDLIKDLCRFAVILMLFHTAFT 1384

  Fly   610 SGLNQLLW-YYADLEKKRCPEVSPMSALLNMNGTNDPNACIVWRRFSNLFETTQTLFWAVFGLID 673
            ..|..|.. .|...:.....||: :...|||                     :..||:|:|||.:
Zfish  1385 LSLTALCQPLYPQEQHNTTTEVT-VPGPLNM---------------------SVLLFFALFGLTE 1427

  Fly   674 LDSF-ELDGIKIFTRFWGMLMFGTYSVINIVVLLNLLIAMMNHSYQLISERADVEWKFARSKLWI 737
            .|.. ::|.....|.....::||.|.|:..:||:|||||||:.:||.|..::|.||||.|:.|..
Zfish  1428 PDKIPDVDRSPPATAVLAKMVFGVYLVVTFIVLINLLIAMMSDTYQRIQAQSDTEWKFGRAVLIR 1492

  Fly   738 SYFEEGGTCPPPFNIIPTPKSIWYAIKWMRRVFCSGSSAARREHLKTIRRKAQQASDRDFKYQQI 802
            ....:.| .|.|||:.   .:::|::|    |.|              :|..:..|         
Zfish  1493 DMSRKSG-IPSPFNLF---TNLFYSVK----VVC--------------KRAGKMCS--------- 1526

  Fly   803 MRNLVRRYVTVEQRKAESQGVTEDDVNEIKQDISAFRCELVEILKNSGMDTNVTAGQGGGGGKKN 867
                           :||:.|..:|  |..:.:|..|          .:|....|...|..|.|.
Zfish  1527 ---------------SESRDVMNED--EDAEGLSESR----------SLDLLSQASVSGIRGNKR 1564

  Fly   868 RQKERRLMKGFNIAPPGSTGSLA 890
            .|          |.|.|...|||
Zfish  1565 TQ----------ILPEGGQISLA 1577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpgammaNP_001137830.2 trp 77..841 CDD:273311 180/828 (22%)
ANK 113..>217 CDD:238125 25/118 (21%)
ANK repeat 118..147 CDD:293786 6/28 (21%)
ANK repeat 175..217 CDD:293786 11/41 (27%)
TRP_2 227..286 CDD:285535 18/90 (20%)
RRT14 <778..892 CDD:293680 21/113 (19%)
trpn1NP_899192.1 ANK repeat 47..78 CDD:293786
Ank_4 48..101 CDD:290365
ANK 77..239 CDD:238125
ANK repeat 80..111 CDD:293786
ANK repeat 113..148 CDD:293786
ANK repeat 150..184 CDD:293786
Ank_2 155..250 CDD:289560
ANK 182..300 CDD:238125
ANK repeat 186..217 CDD:293786
ANK repeat 219..250 CDD:293786
ANK 247..373 CDD:238125
Ank_4 254..300 CDD:290365
ANK repeat 286..317 CDD:293786
Ank_2 291..382 CDD:289560
ANK repeat 319..350 CDD:293786
ANK 347..474 CDD:238125
ANK repeat 352..382 CDD:293786
Ank_4 389..441 CDD:290365
ANK repeat 420..450 CDD:293786
Ank_2 425..535 CDD:289560
ANK repeat 496..536 CDD:293786
ANK 539..665 CDD:238125
ANK repeat 540..576 CDD:293786
Ank_2 544..641 CDD:289560
ANK repeat 578..609 CDD:293786
ANK 606..732 CDD:238125
ANK repeat 611..642 CDD:293786
Ank_2 616..709 CDD:289560
ANK repeat 644..674 CDD:293786
ANK repeat 678..709 CDD:293786
Ank_2 683..812 CDD:289560
ANK repeat 745..812 CDD:293786
ANK repeat 749..780 CDD:293786
ANK 781..918 CDD:238125 21/80 (26%)
Ank_4 815..865 CDD:290365 7/27 (26%)
ANK repeat 847..895 CDD:293786 11/47 (23%)
ANK 896..1053 CDD:238125 39/190 (21%)
ANK repeat 897..964 CDD:293786 17/81 (21%)
Ank_2 902..997 CDD:289560 22/115 (19%)
ANK repeat 966..997 CDD:293786 6/36 (17%)
Ank_2 971..1058 CDD:289560 22/108 (20%)
ANK repeat 999..1030 CDD:293786 10/43 (23%)
Ion_trans <1342..1480 CDD:278921 41/159 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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