DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trpgamma and spe-41

DIOPT Version :9

Sequence 1:NP_001137830.2 Gene:Trpgamma / 34991 FlyBaseID:FBgn0032593 Length:1188 Species:Drosophila melanogaster
Sequence 2:NP_001254872.1 Gene:spe-41 / 175446 WormBaseID:WBGene00004976 Length:854 Species:Caenorhabditis elegans


Alignment Length:738 Identity:164/738 - (22%)
Similarity:312/738 - (42%) Gaps:132/738 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 DNENLEMVELLINYNVDT------KDALLHSI---SEEFVEAVEVLLDHENVTFHSEGNHSWESA 183
            |:..|..::.|:   :||      |:|||.||   |...||.|.||.        .:..:...|.
 Worm    80 DDGRLSSLQSLL---MDTSSEESLKEALLLSIAVGSRPLVEFVLVLF--------VDAPYLERSG 133

  Fly   184 SEDTSTFTPDITPLILAAHRDNYEIIKILLDRGAVLPMPHDVRCGCDECVQSRQEDSLRHSRSR- 247
            |.::..|.|.:|||:||...:|:.|::.|:.||..:.:||.:.|.|..|   ::|....||.:| 
 Worm   134 SANSPHFPPHMTPLMLACILNNFSIVQCLITRGHCIQIPHFITCECKTC---KRETVTTHSSTRL 195

  Fly   248 INAYRALASPSLIALSSKDPILTAFELSWELRRLSFLEH-EFKNEYQELRKQCQDFATALLDHTR 311
            ::..|||:|.:.:.|::.|.......::.:|::|:..:. |:...|::|....|.|...:.|...
 Worm   196 VDVMRALSSEAYLWLATDDVFAATCAVARDLQQLASDDQLEYVETYRDLEMNVQRFLCRISDQAW 260

  Fly   312 TSHELEILL---NHDPTGPVYEHGERM---HLNRLKLAIKLRQKKFVAHSNVQQLLASI----WY 366
            ...|..:::   |:.|        |||   ...||::|:..:.::|...:|.|..:.|:    ||
 Worm   261 RVDEFNMMVANRNYCP--------ERMTEISSPRLQMAMDSQMRQFTCSTNSQTTIKSVFRSDWY 317

  Fly   367 EGLPGFRRKNMALQAVDIIRIGIMFPIFSLAYILAPYSSIGQTMRKPFIKFICHSASYFTFLFLL 431
            .  .|.:.|..|.:   .:|..|:.|...:.:...|  :.|.||..|..:||.|...|..||...
 Worm   318 N--YGIKPKRDAWR---FLRACILMPFLVMLHAFMP--TKGTTMCVPLARFIAHITMYLVFLIAA 375

  Fly   432 MLASQRIETFIGGWFFADSSGMLNTMEELPTKRGAKPTFIEWLILAWVSGLIWSEVKQLWDVGLQ 496
            :|....      |::||.:..:..|::.|           |..:.|:|.||...:....:.||..
 Worm   376 ILRPTI------GFYFAWTDSIEVTVQAL-----------EIFMYAYVMGLALEKGILFYRVGRD 423

  Fly   497 EYLNDMWNVIDFVTNSLYVATVALRVVSFFQVQ--KEMIYNSHATDLPRERWDAWDPMLISEGLF 559
            .:....|...|.....:::.::.     ||..:  |...::..:.|  |..|.:::..|:.|...
 Worm   424 GFFAFWWRWFDAALIFIFLFSLI-----FFTGKWGKREAFDPSSVD--RMHWPSFEFSLLHEICL 481

  Fly   560 SAANIFSSLKLVYIFSVNPHLGPLQVSLSRMVMDIMKFFFLYVLVLFAFGSGLNQLLWYYADLEK 624
            :.|.:.|.||..|...:...:|...:|:.:.|.....:..:.|.::.:|..|||.::..|.:...
 Worm   482 AIACVLSILKCFYYAQMMKSIGGSVISVGKCVGKTYTYILIMVAIIVSFSVGLNIIVDPYLNRST 546

  Fly   625 KRCPEVSPMSALLNMNGTNDPNACIVWRRFSNLFET----TQTLFWAVFGLIDLDSF-------- 677
            .:.             |..|      :.:.::.:||    ::.|||::||.:...:|        
 Worm   547 MKI-------------GDQD------YTKTTDSYETIGTSSKNLFWSIFGYLGPSTFTTVVGNTG 592

  Fly   678 -ELDGIK------IFTRFWGMLMFGTYSVINIVVLLNLLIAMMNHSYQLISERADVEWKFARSKL 735
             .:|.:|      .|.     ::...|..|.|:.:|||:.:::......:.:..::|:||.|:.:
 Worm   593 PNMDPVKHTLNSSTFE-----ILAAVYHGILIITVLNLMTSILVKGADEVLDNEEMEFKFTRAAI 652

  Fly   736 WISYFEEGGTCPPPFNIIPTPKSIWYAIKWMRRVFCS---GSSAARREHLKTIRRKAQQASDRDF 797
            :..:.......|||.|:|.......:. ..::|.:.|   |...|..:       ...||:|.  
 Worm   653 YSEFLSWEMAAPPPLNLILVVAHFVHR-NLLKRYYASPAWGEKPANDD-------VEDQAADE-- 707

  Fly   798 KYQQIMRNLVRRYVTVEQRKAES 820
            :|.|::..:..|:|..::.|.:|
 Worm   708 QYMQLLMVVFARFVASKECKYKS 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpgammaNP_001137830.2 trp 77..841 CDD:273311 164/738 (22%)
ANK 113..>217 CDD:238125 30/97 (31%)
ANK repeat 118..147 CDD:293786 5/24 (21%)
ANK repeat 175..217 CDD:293786 13/41 (32%)
TRP_2 227..286 CDD:285535 15/59 (25%)
RRT14 <778..892 CDD:293680 9/43 (21%)
spe-41NP_001254872.1 trp 87..671 CDD:273311 148/660 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3141
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000660
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.860

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