DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trpgamma and Trpc5

DIOPT Version :9

Sequence 1:NP_001137830.2 Gene:Trpgamma / 34991 FlyBaseID:FBgn0032593 Length:1188 Species:Drosophila melanogaster
Sequence 2:NP_543174.1 Gene:Trpc5 / 140933 RGDID:619787 Length:974 Species:Rattus norvegicus


Alignment Length:989 Identity:433/989 - (43%)
Similarity:599/989 - (60%) Gaps:146/989 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 PHQEIR---QLTLEEKKFLLAVERGDMAGTRRMLQKAQDTEYINVNCVDPLGRTALLMAIDNENL 132
            |.|.:|   :|:.|||.||.|||:||.|..::.||:|:....:|:||:|||||:|||:||:||||
  Rat    19 PLQIVRAETELSAEEKAFLSAVEKGDYATVKQALQEAEIYYNVNINCMDPLGRSALLIAIENENL 83

  Fly   133 EMVELLINYNVDTKDALLHSISEEFVEAVEVLLDHENVTFHSEGNHSWESASEDT--STFTPDIT 195
            |::|||:|::|...||||::|.:|.|.|||:||.:..    ..|.....:...||  |.||||||
  Rat    84 EIMELLLNHSVYVGDALLYAIRKEVVGAVELLLSYRK----PSGEKQVPTLMMDTQFSEFTPDIT 144

  Fly   196 PLILAAHRDNYEIIKILLDRGAVLPMPHDVRCGCDECVQSRQEDSLRHSRSRINAYRALASPSLI 260
            |::||||.:||||||:|:.:...:|.||.:||.|.|||.|.:.|||||||||:|.|:||||||||
  Rat   145 PIMLAAHTNNYEIIKLLVQKRVTIPRPHQIRCNCVECVSSSEVDSLRHSRSRLNIYKALASPSLI 209

  Fly   261 ALSSKDPILTAFELSWELRRLSFLEHEFKNEYQELRKQCQDFATALLDHTRTSHELEILLNHDPT 325
            ||||:|||||||.|.|||:.||.:|:|||.||:||.:||:.||..|||..|:|.||||:|||.. 
  Rat   210 ALSSEDPILTAFRLGWELKELSKVENEFKAEYEELSQQCKLFAKDLLDQARSSRELEIILNHRD- 273

  Fly   326 GPVYEHGERM------HLNRLKLAIKLRQKKFVAHSNVQQLLASIWYEGLPGFRRKNMALQAVDI 384
                :|.|.:      .|.:||:|||..||:|||..|.|||||::||:|.||:|||:..::.:..
  Rat   274 ----DHSEELDPQKYHDLAKLKVAIKYHQKEFVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTC 334

  Fly   385 IRIGIMFPIFSLAYILAPYSSIGQTMRKPFIKFICHSASYFTFLFLLMLASQRIETFIGGWFFAD 449
            :.||.:||:.|:||:::|.|::|..::|||||||||:|||.||||:|:||||.|           
  Rat   335 MTIGFLFPMLSIAYLISPRSNLGLFIKKPFIKFICHTASYLTFLFMLLLASQHI----------- 388

  Fly   450 SSGMLNTMEELPTKRGAKPTFIEWLILAWVSGLIWSEVKQLWDVGLQEYLNDMWNVIDFVTNSLY 514
                  ...:|.. :|..||.:||:||.||.|.||.|:|::||.|..||::|.||::||..||||
  Rat   389 ------VRTDLHV-QGPPPTVVEWMILPWVLGFIWGEIKEMWDGGFTEYIHDWWNLMDFAMNSLY 446

  Fly   515 VATVALRVVSFFQVQKEMIYNSHATDLPRERWDAWDPMLISEGLFSAANIFSSLKLVYIFSVNPH 579
            :||::|::|::.:      ||.   ..|||.|:.|.|.||:|.||:.:||.|||:|:.:|:.|.|
  Rat   447 LATISLKIVAYVK------YNG---SRPREEWEMWHPTLIAEALFAISNILSSLRLISLFTANSH 502

  Fly   580 LGPLQVSLSRMVMDIMKFFFLYVLVLFAFGSGLNQLLWYYADLEKKRCPEVSPMSALLNMNGTND 644
            |||||:||.||::||:||.|:|.|||.||.:|||||.:||                  .....::
  Rat   503 LGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFYY------------------ETRAIDE 549

  Fly   645 PNACIVWR------RFSNLFETTQTLFWAVFGLIDLDSFELDGIKIFTRFWGMLMFGTYSVINIV 703
            ||.|...|      .||.||||.|:|||:||||::|....:.....||.|.|..|||||:||::|
  Rat   550 PNNCKGIRCEKQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFVGATMFGTYNVISLV 614

  Fly   704 VLLNLLIAMMNHSYQLISERADVEWKFARSKLWISYFEEGGTCPPPFNIIPTPKSIWYAIKWMRR 768
            ||||:||||||:|||||::.||:||||||:|||:|||:||||.||||||||:|||..|...|...
  Rat   615 VLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTLPPPFNIIPSPKSFLYLGNWFNN 679

  Fly   769 VFC---SGSSAARREHLKTIRRKAQQASDRDFKYQQIMRNLVRRYVTVEQRKAE-SQGVTEDDVN 829
            .||   ......||.:|::...:...:..::..||:::||||:|||....|.:: ::|:||::..
  Rat   680 TFCPKRDPDGRRRRHNLRSFTERHADSLIQNQHYQEVIRNLVKRYVAAMIRNSKTNEGLTEENFK 744

  Fly   830 EIKQDISAFRCELVEILKNSGMDTNVTAGQGGGGGKKNRQKERRLMKGFNIAPPGSTGSLAPVAE 894
            |:|||||:||.|::::|                   .||:..||..         ||.|    ||
  Rat   745 ELKQDISSFRYEVLDLL-------------------GNRKHPRRSF---------STSS----AE 777

  Fly   895 FSTSLDNYDNQHEILSSTLSTLFTPNFMHKRQQSQAGSGGGGSESPTTPTAPQ--GTQGAAMTAS 957
            ||...|..|......:.:.|..|  |...|::..|.        :|...|.|:  |.||.....|
  Rat   778 FSQRDDTNDGSGGARAKSKSVSF--NLGCKKKACQG--------APLIRTMPRASGAQGKPKAES 832

  Fly   958 SQVTKYNKSALKPYNKRIAGHKKRWGTLIEAAKVGNVSKMLGRSKSEDSVCNSSHTSTPVHGQMR 1022
            |.    .:|.:.|..|::       |.|.        ||..|::        |..||.|::....
  Rat   833 SG----KRSFMGPSFKKL-------GLLF--------SKFNGQT--------SEPTSEPMYTISD 870

  Fly  1023 VTYAQNSPQQEYGY 1036
            ....|:|..|:..|
  Rat   871 GIAQQHSMWQDIRY 884

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpgammaNP_001137830.2 trp 77..841 CDD:273311 386/781 (49%)
ANK 113..>217 CDD:238125 56/105 (53%)
ANK repeat 118..147 CDD:293786 18/28 (64%)
ANK repeat 175..217 CDD:293786 22/43 (51%)
TRP_2 227..286 CDD:285535 42/58 (72%)
RRT14 <778..892 CDD:293680 33/114 (29%)
Trpc5NP_543174.1 trp 17..756 CDD:273311 389/790 (49%)
ANK repeat 69..98 CDD:293786 18/28 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341881
Domainoid 1 1.000 274 1.000 Domainoid score I1701
eggNOG 1 0.900 - - E1_KOG3609
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 801 1.000 Inparanoid score I473
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D355630at33208
OrthoFinder 1 1.000 - - FOG0000660
OrthoInspector 1 1.000 - - mtm8940
orthoMCL 1 0.900 - - OOG6_102173
Panther 1 1.100 - - O PTHR10117
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X802
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.800

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