DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trpgamma and trpc3

DIOPT Version :9

Sequence 1:NP_001137830.2 Gene:Trpgamma / 34991 FlyBaseID:FBgn0032593 Length:1188 Species:Drosophila melanogaster
Sequence 2:NP_001276813.2 Gene:trpc3 / 101887082 ZFINID:ZDB-GENE-140129-1 Length:902 Species:Danio rerio


Alignment Length:902 Identity:343/902 - (38%)
Similarity:494/902 - (54%) Gaps:140/902 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 GADAADSAEKKLGSESSGSGHIAVQIE---PARRV-------KRHSIHG---MMEEENTIRPHQE 74
            |.||......|...||||.....::..   |.||:       :|.:|.|   |.....|      
Zfish    31 GVDAHHLKSVKTVRESSGYYRYNMKSSESFPHRRMTLPREKGRRQAIRGPAFMFNARGT------ 89

  Fly    75 IRQLTLEEKKFLLAVERGDMAGTRRMLQKAQDTEYINVNCVDPLGRTALLMAIDNENLEMVELLI 139
              .||.||::||.|.|.|::...|:||:::..   :||||:|.:|:..|.:|:.||:||:.|||:
Zfish    90 --SLTPEEERFLDAAEYGNIPVVRKMLEESLT---LNVNCMDYMGQNGLQLAVGNEHLEVTELLL 149

  Fly   140 NYN--VDTKDALLHSISEEFVEAVEVLLDHENVTFHSEGN-------------HSWESASEDTST 189
            ..:  ....||||.:||:.:|..||.||.|.     |.||             ..:.|..||.:.
Zfish   150 RRDNLARVGDALLLAISKGYVRIVEALLGHP-----SFGNGERLTRSPCELQDDDFYSYDEDGTR 209

  Fly   190 FTPDITPLILAAHRDNYEIIKILLDRGAVLPMPHDVRCGCDECVQSRQEDSLRHSRSRINAYRAL 254
            |:|||||:|||||...||::.:||.:||.:..|||..|.|.:|.:.:::||..||||||||||.|
Zfish   210 FSPDITPIILAAHCQKYEVVHMLLLKGARIERPHDYFCKCADCTEKQRKDSFSHSRSRINAYRGL 274

  Fly   255 ASPSLIALSSKDPILTAFELSWELRRLSFLEHEFKNEYQELRKQCQDFATALLDHTRTSHELEIL 319
            |||:.::|||:||:|||.|||.||.:|:.:|.||||:|::|..||:||...:||..|.:.|:|.:
Zfish   275 ASPAYLSLSSEDPVLTALELSNELAKLANIEKEFKNDYRKLSMQCKDFVVGVLDLCRDTEEVEAI 339

  Fly   320 LNHDPTGPVYEHGE--RMHLNRLKLAIKLRQKKFVAHSNVQQLLASIWYEGLPGFRRKNMALQAV 382
            ||.|.:..: |.|:  |..|:|:|||||...||||||.|.||.|.:||||.|.|.|.:..|::.:
Zfish   340 LNGDVSAEL-EEGQHHRSLLSRVKLAIKYEVKKFVAHPNCQQQLLTIWYENLSGLREQTTAVKCL 403

  Fly   383 DIIRIGIMFPIFSLAYILAPYSSIGQTMRKPFIKFICHSASYFTFLFLLML-ASQRIETFIGGWF 446
            .::.:.:..|:.::.|..||.|.:|:.:|.||:||:.|:||:..||.||:. ||.|.|       
Zfish   404 VVLVVALGLPLLAVGYWFAPCSKLGKILRSPFMKFVAHAASFIIFLCLLVFNASDRFE------- 461

  Fly   447 FADSSGMLN----TMEELPTK-RGAKPTFIEW---LILAWVSGLIWSEVKQLWDVGLQEYLNDMW 503
                 |:..    |:.:.|.: ...|.|...|   ||:.||:|::|||.|:||..|.:||:..:|
Zfish   462 -----GITTLPNVTVTDHPLQIFRVKTTQFSWTEILIMVWVAGMMWSECKELWTEGPREYIMQLW 521

  Fly   504 NVIDFVTNSLYVATVALRVVSFFQVQKEMIY---NSHATDL--------------PRERWDAWDP 551
            ||:||...|:::|....|..:|.|..|...|   ..||.||              .|::|...||
Zfish   522 NVLDFGMLSIFIAAFTARFFAFMQAMKAQKYVDEKIHAPDLSMVTLPPDVRYFTYARDKWLPSDP 586

  Fly   552 MLISEGLFSAANIFSSLKLVYIFSVNPHLGPLQVSLSRMVMDIMKFFFLYVLVLFAFGSGLNQLL 616
            .||||||::.|.:.|..::.||...|...||||:||.|.|.||.||..|:::|..||..|:..|.
Zfish   587 QLISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVLFIMVFLAFMIGMFILY 651

  Fly   617 WYYADLEKKRCPEVSPMSALLNMNGTNDPNACIVWRRFSNLFETTQTLFWAVFGLIDLDSFELDG 681
            .||..      .:|:|                    .|:.:.|:.:||||::|||.::.|..|..
Zfish   652 SYYLG------AKVNP--------------------AFTTVEESFKTLFWSIFGLSEVSSVVLKY 690

  Fly   682 IKIFTRFWGMLMFGTYSVINIVVLLNLLIAMMNHSYQLISERADVEWKFARSKLWISYFEEGGTC 746
            ...|....|.:::|.|:|..:|||||:||||:|.|||.|.:.|||||||||||||:|||:.|.|.
Zfish   691 DHKFIENIGYVLYGIYNVTMVVVLLNMLIAMINSSYQEIEDDADVEWKFARSKLWLSYFDNGKTL 755

  Fly   747 PPPFNIIPTPKSIWYAIKWMRRVFCSGSSAARREHLK---------------TIRRKAQQASD-- 794
            ||||:|:|:|||.:..:|.:..:.     ..||..||               ...:.:.:.:|  
Zfish   756 PPPFSIVPSPKSFYLCVKRLVNLL-----RCRRRRLKKDVELGMDNSKSKLNLFTQSSMRMTDSH 815

  Fly   795 -------RDFKYQQIMRNLVRRYVTVEQRKAESQGVTEDDVNEIKQDISAFRCELVE 844
                   :..:|||||:.|::|||...|...|:..|.|.::.|||||||:.|.||:|
Zfish   816 SFNSILNQPTRYQQIMKRLIKRYVLKAQVDKENDEVNEGELKEIKQDISSLRYELLE 872

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpgammaNP_001137830.2 trp 77..841 CDD:273311 324/830 (39%)
ANK 113..>217 CDD:238125 46/118 (39%)
ANK repeat 118..147 CDD:293786 10/30 (33%)
ANK repeat 175..217 CDD:293786 20/54 (37%)
TRP_2 227..286 CDD:285535 33/58 (57%)
RRT14 <778..892 CDD:293680 29/91 (32%)
trpc3NP_001276813.2 trp 78..869 CDD:273311 327/850 (38%)
ANK 101..233 CDD:238125 52/139 (37%)
ANK repeat 128..159 CDD:293786 10/30 (33%)
ANK repeat 206..241 CDD:293786 18/34 (53%)
TRP_2 247..306 CDD:285535 33/58 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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