DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trpgamma and trpc1

DIOPT Version :9

Sequence 1:NP_001137830.2 Gene:Trpgamma / 34991 FlyBaseID:FBgn0032593 Length:1188 Species:Drosophila melanogaster
Sequence 2:XP_002937145.3 Gene:trpc1 / 100497011 XenbaseID:XB-GENE-1004978 Length:896 Species:Xenopus tropicalis


Alignment Length:854 Identity:328/854 - (38%)
Similarity:501/854 - (58%) Gaps:109/854 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 IKNGADAADSAEKKLGSESSGSGHIAVQIEPARRVKRHSIHGMMEEENTIRPHQEIRQLTLEEKK 84
            :.||:....:|..:....||.:..:|  ::..|.||                    .:.||:|:.
 Frog   111 VSNGSSVIMAALYQSTDSSSPNKFLA--LKDVREVK--------------------EETTLDERL 153

  Fly    85 FLLAVERGDMAGTRRMLQKAQDTEYINVNCVDPLGRTALLMAIDNENLEMVELLINYNVDTKDAL 149
            ||||.|:||....:::|:: ..:|.:|:|.||.|||.|:.::|:||||::::||:||...:.|||
 Frog   154 FLLACEKGDYYMVKKLLEE-NSSEELNINSVDVLGRNAITISIENENLDILQLLLNYGCQSTDAL 217

  Fly   150 LHSISEEFVEAVEVLLDHENVTFHSEGNHSWES-----------ASEDTSTFTPDITPLILAAHR 203
            |.:|..|.|.||::||:|:         ..|.:           .:.:.|| |.|:.|:||||||
 Frog   218 LVAIDSEVVGAVDILLNHQ---------PKWRTRPTIVKLMERIQNPEYST-TMDVAPVILAAHR 272

  Fly   204 DNYEIIKILLDRGAVLPMPHDVRCGCDECVQSRQEDSLRHSRSRINAYRALASPSLIALSSKDPI 268
            :||||:.:||.:...||.||.|.|.|..|....::|||||||.|::.||.||||:||.|:.:|||
 Frog   273 NNYEILTMLLKQDVSLPKPHAVGCECTLCTAKNKKDSLRHSRFRLDIYRCLASPALIMLTEEDPI 337

  Fly   269 LTAFELSWELRRLSFLEHEFKNEYQELRKQCQDFATALLDHTRTSHELEILLNHDPTG-PVYEHG 332
            |.|||||.:|:.||.:|.||:|:|:||.::|:.||..||...|.|.|||::|||..:. ||.:.|
 Frog   338 LRAFELSADLKELSLVEVEFRNDYEELAQKCKTFAKDLLAQARNSRELEVILNHQSSDEPVDKRG 402

  Fly   333 ---ERMHLNRLKLAIKLRQKKFVAHSNVQQLLASIWYEGLPGFRRKNMALQAVDIIRIGIMFPIF 394
               |||:|:|||||||..||:||:.||.||.|.::|:..:.|:|||:...:.:.::.:||.:|:.
 Frog   403 LLEERMNLSRLKLAIKYNQKEFVSQSNCQQFLNTVWFGQMAGYRRKHTCKKILIVLTVGIFWPVL 467

  Fly   395 SLAYILAPYSSIGQTMRKPFIKFICHSASYFTFLFLLMLASQRIETFIGGWFFADSSGMLNTMEE 459
            |:.|:|||.|.:|:.:..||:|||.|.|||||||.||.|.|           ...:....|||  
 Frog   468 SVCYLLAPKSQVGRIIHTPFMKFIIHGASYFTFLLLLNLYS-----------LVYNEDKKNTM-- 519

  Fly   460 LPTKRGAKPTFIEWLILAWVSGLIWSEVKQLWDVGLQEYLNDMWNVIDFVTNSLYVATVALRVVS 524
                 |.....|::|::.|:.|::||:||:||..||:::|.:..|.:.||.||||:||.||:||:
 Frog   520 -----GPALERIDFLLIMWLIGMVWSDVKRLWYDGLEDFLEESRNQLSFVMNSLYLATFALKVVA 579

  Fly   525 FFQVQKEMIYNSHATDLPRERWDAWDPMLISEGLFSAANIFSSLKLVYIFSVNPHLGPLQVSLSR 589
                     :|...:...|:.|||:.|.|::||||:..|:.|.|:|.::::.:..|||||:|:.:
 Frog   580 ---------HNKFHSIAERKDWDAFHPTLVAEGLFAFGNVLSYLRLFFMYTTSSILGPLQISMGQ 635

  Fly   590 MVMDIMKFFFLYVLVLFAFGSGLNQLLWY---YADLEKKRCPEVSPMSALLNMNGTNDPNACIVW 651
            |:.|..||..:::||||:|..||.||  |   |...|:|.|      ..:.....:||       
 Frog   636 MLQDFGKFLGMFLLVLFSFTIGLTQL--YDKGYTTNEQKDC------VGIFCEQQSND------- 685

  Fly   652 RRFSNLFETTQTLFWAVFGLIDLDSF--------ELDGIKIFTRFWGMLMFGTYSVINIVVLLNL 708
             .|.:...|...|||.:|.|..:..|        ||..      |.|.|:.|||:|:.::||..|
 Frog   686 -AFHSFTGTCYALFWYIFSLAHVALFVTRFSFSEELQS------FVGALIVGTYNVVVVIVLTKL 743

  Fly   709 LIAMMNHSYQLISERADVEWKFARSKLWISYFEEGGTCPPPFNIIPTPKSIWYAIKWMRRVFCSG 773
            |:||::.|:|||:...|.||||||:|||:|||::..|.||||||:|:||:|.|....:.:..||.
 Frog   744 LVAMLHKSFQLIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNIVPSPKTICYLFNSISKWICSH 808

  Fly   774 SSAARREHLKTIRRKAQQASDRDFKYQQIMRNLVRRYVTVEQRKAES-QGVTEDDVNEIKQDISA 837
            ::..|.:...:::........||..||::|..||.||:|..::|.:| ...|.:::||::||:|.
 Frog   809 TTTGRVKRQNSLKEWKSLRQKRDENYQKVMCCLVHRYLTSMRQKMQSTDQATVENLNELRQDLSK 873

  Fly   838 FRCELVEIL 846
            ||.|:.::|
 Frog   874 FRNEMRDLL 882

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpgammaNP_001137830.2 trp 77..841 CDD:273311 317/790 (40%)
ANK 113..>217 CDD:238125 46/114 (40%)
ANK repeat 118..147 CDD:293786 13/28 (46%)
ANK repeat 175..217 CDD:293786 18/52 (35%)
TRP_2 227..286 CDD:285535 32/58 (55%)
RRT14 <778..892 CDD:293680 23/70 (33%)
trpc1XP_002937145.3 trp 151..877 CDD:273311 315/785 (40%)
ANK repeat 186..213 CDD:293786 13/26 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D355630at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10117
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

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