DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trpgamma and trpc4

DIOPT Version :9

Sequence 1:NP_001137830.2 Gene:Trpgamma / 34991 FlyBaseID:FBgn0032593 Length:1188 Species:Drosophila melanogaster
Sequence 2:XP_002939629.3 Gene:trpc4 / 100485338 XenbaseID:XB-GENE-1013618 Length:969 Species:Xenopus tropicalis


Alignment Length:1039 Identity:450/1039 - (43%)
Similarity:626/1039 - (60%) Gaps:128/1039 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 EENTIRPHQE------IR---QLTLEEKKFLLAVERGDMAGTRRMLQKAQDTEYINVNCVDPLGR 120
            :.||..|:|:      :|   :|:..||.:|.|||:||.|..::.|::|:....||:||:|||||
 Frog     7 KRNTNSPYQDRIPLRIVRSESELSPSEKAYLSAVEKGDYASVKQALEEAEIYFKININCIDPLGR 71

  Fly   121 TALLMAIDNENLEMVELLINYNVDTKDALLHSISEEFVEAVEVLLDHENVTFHSEGNHSWES--- 182
            ||||:||:|||||::|||::|||...|||||:|.:|.|.|||:||:|:        ..|.|.   
 Frog    72 TALLIAIENENLELIELLLSYNVYVGDALLHAIRKEVVGAVELLLNHK--------KPSGEKQVP 128

  Fly   183 ---ASEDTSTFTPDITPLILAAHRDNYEIIKILLDRGAVLPMPHDVRCGCDECVQSRQEDSLRHS 244
               ..:..|.|||||||:|||||.:||||||.|:.:|..:|.||:|||.|.|||.....||||||
 Frog   129 PILLDKQFSEFTPDITPIILAAHTNNYEIIKHLVQKGVSVPRPHEVRCNCVECVSGSDVDSLRHS 193

  Fly   245 RSRINAYRALASPSLIALSSKDPILTAFELSWELRRLSFLEHEFKNEYQELRKQCQDFATALLDH 309
            |||:|.||||:|||||||||:||.||||:|||||:.||.:|:|||:||:||..||:.||..|||.
 Frog   194 RSRLNIYRALSSPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSEYEELSSQCKQFAKDLLDQ 258

  Fly   310 TRTSHELEILLNHDPTGPVYEHGERMHLNRLKLAIKLRQKKFVAHSNVQQLLASIWYEGLPGFRR 374
            ||:|.||||:||:...|.:.:......|.|||||||.|||:|||..|.||||||.||:..||:||
 Frog   259 TRSSRELEIILNYRDDGGLLDDSNGNDLARLKLAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRR 323

  Fly   375 KNMALQAVDIIRIGIMFPIFSLAYILAPYSSIGQTMRKPFIKFICHSASYFTFLFLLMLASQRIE 439
            ::..::.|..:.:|::||.||..|::||.|:.|..:||||||||||:|||.||||||:||||.| 
 Frog   324 RHWVVKMVTCVIVGLLFPAFSCCYLIAPKSTFGLFIRKPFIKFICHTASYLTFLFLLLLASQNI- 387

  Fly   440 TFIGGWFFADSSGMLNTMEELPTKRGAKPTFIEWLILAWVSGLIWSEVKQLWDVGLQEYLNDMWN 504
                           |..|.|   :|..||.:||:||.||.|.||.|:||:||.|.|:|::|.||
 Frog   388 ---------------NKTESL---QGPAPTIVEWMILPWVLGFIWGEIKQMWDGGFQDYIHDWWN 434

  Fly   505 VIDFVTNSLYVATVALRVVSF--FQVQKEMIYNSHATDLPRERWDAWDPMLISEGLFSAANIFSS 567
            ::|||.||||:||::|::|::  |..|:.           |..|:.:.|.|::|.:|:.||||||
 Frog   435 LMDFVMNSLYLATISLKIVAYVKFHGQRN-----------RAEWEMFHPTLVAEAVFAIANIFSS 488

  Fly   568 LKLVYIFSVNPHLGPLQVSLSRMVMDIMKFFFLYVLVLFAFGSGLNQLLWYY-ADLEKKRCPEVS 631
            |:|:.:|:.|.||||||:||.||::||:||.|:|.|||.||.:|||||.:|| ||.:...|.   
 Frog   489 LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFYYEADAKSSGCK--- 550

  Fly   632 PMSALLNMNGTNDPNACIVWRRFSNLFETTQTLFWAVFGLIDLDSFELDGIKIFTRFWGMLMFGT 696
                  .:......||      ||.||||.|:|||::||||:|....:|....||.|.|..||||
 Frog   551 ------GIRCEKQNNA------FSTLFETLQSLFWSIFGLINLYVTNVDPKHEFTEFVGATMFGT 603

  Fly   697 YSVINIVVLLNLLIAMMNHSYQLISERADVEWKFARSKLWISYFEEGGTCPPPFNIIPTPKSIWY 761
            |:||::|||||:||||||:|||||::.||:||||||:|||:||||||||.|.||||||:|||:||
 Frog   604 YNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFEEGGTLPTPFNIIPSPKSLWY 668

  Fly   762 AIKWMRRVFCSGSSAARREHLKTIRRKAQQASDRDFKYQQIMRNLVRRYVTVEQRKAES-QGVTE 825
            .|||:|:..|......:.|....|.|:|.....|...||::|:|||:|||....|.|:: :|:||
 Frog   669 LIKWIRKQICKKKMKRKPESFGAIGRRAADNLRRHNHYQEVMKNLVKRYVAAMIRDAKTEEGLTE 733

  Fly   826 DDVNEIKQDISAFRCELVEILKNSGMDTNVTAGQGGGGG-----KKNRQKERR---LMKGFNIAP 882
            ::..|:|||||:||.|::.:||.:..:...:....|.|.     :|::.||:|   ..|.|::. 
 Frog   734 ENFKELKQDISSFRFEVLGLLKGNKFNIQSSKMNNGIGDIQETEEKSKIKEKRSRTQKKNFSLF- 797

  Fly   883 PGSTGSLAP-VAEFSTSLDN-YDNQHEILSSTL-----------STLFTPNFMHKRQQSQAGSGG 934
             ..|..:.| .|..::.:.| ..|...:|:|.|           :.:.:....|||.:|      
 Frog   798 -DITTMIHPKSAVIASDVHNSVSNGSALLASELVKEKQRKNSFVTDIKSFGLFHKRSKS------ 855

  Fly   935 GGSESPTTPTAPQGTQGAA----MTASSQVTKYNKSALKPYNKRIAGHKKRWGTLIEAAKVGNVS 995
             ....|.:.|....::..|    |......|.......:|.:..:                 ||:
 Frog   856 -NFSDPISKTIYSVSEEVANQQDMELGDNTTDLQVKESEPASCEL-----------------NVN 902

  Fly   996 KMLGRSKSEDSVCNSSHTSTP-----VHGQMRVTYAQNSPQQEYGYHGETSSTTISTPTPTISV 1054
            |:..:.....|..|:|...:|     .|..:.:........:.....|:.:|||:.:|....|:
 Frog   903 KLTEQYALSPSSVNTSEIPSPQPSDSQHSSVALNEHSTDALKHMDSPGDENSTTVESPNEQDSI 966

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpgammaNP_001137830.2 trp 77..841 CDD:273311 402/773 (52%)
ANK 113..>217 CDD:238125 60/109 (55%)
ANK repeat 118..147 CDD:293786 20/28 (71%)
ANK repeat 175..217 CDD:293786 22/47 (47%)
TRP_2 227..286 CDD:285535 41/58 (71%)
RRT14 <778..892 CDD:293680 40/123 (33%)
trpc4XP_002939629.3 trp 17..749 CDD:273311 403/784 (51%)
ANK repeat 69..133 CDD:293786 36/71 (51%)
ANK repeat 135..166 CDD:293786 20/30 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 263 1.000 Domainoid score I1896
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H22955
Inparanoid 1 1.050 784 1.000 Inparanoid score I514
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D355630at33208
OrthoFinder 1 1.000 - - FOG0000660
OrthoInspector 1 1.000 - - mtm9358
Panther 1 1.100 - - LDO PTHR10117
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2373
SonicParanoid 1 1.000 - - X802
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.100

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