DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Idgf3 and chil-23

DIOPT Version :9

Sequence 1:NP_001285982.1 Gene:Idgf3 / 34981 FlyBaseID:FBgn0020414 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001254212.1 Gene:chil-23 / 187739 WormBaseID:WBGene00011167 Length:432 Species:Caenorhabditis elegans


Alignment Length:458 Identity:100/458 - (21%)
Similarity:166/458 - (36%) Gaps:124/458 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LALSLAVLAQFKVSAAPNL--VC------FYDSQGSQRQGLAQFSMIDIELALQFCTHLVYGYAG 65
            :...|.:.||....|..::  :|      :|...|:......|.|.:         ||.|:.:..
 Worm    49 VGFGLGLCAQIYFQAESDVLPICDKRIIGYYSGSGTSNITSTQLSNL---------THTVFAFVY 104

  Fly    66 VNADNYEM--QSINKRLDLEQRHLAQITSMKERYPHIKFLLSVGGDADTYEGNQYIKLLESGQQG 128
            :..|...:  ..|.|...|:.:.:.:..:.|     ||.:.|:||.    :.::|...:...::.
 Worm   105 MTPDGTLLFNNQIEKNRFLKLKEVVRNGNSK-----IKLMFSIGGK----DNSKYFSSVIPSEER 160

  Fly   129 HRRFIESARDLVRRYNFDGLDLALQLPRNKPRKVHGDVGSAWKSFKKFFTGDFIVDTESETHKGQ 193
            .:.||||..:.:..|:.||:||..:.|..:.|       .|:.:|                    
 Worm   161 IQTFIESILEFLEAYDLDGVDLFWKWPEEEYR-------DAYFAF-------------------- 198

  Fly   194 VTALIKDLSAALKQNDLLLSLTVLPNVNSSW-YYDAPSIAPSLDFINLGTFDFLTPQRNPEEADF 257
            :..|.|...|  |:...:||:.:.|.....| ......|..|:||||..:.|:.||..:....|.
 Worm   199 INQLRKTFEA--KKKYYILSIVIPPPTLDGWGKKRLNKIIESVDFINAYSTDYYTPLADNLSDDI 261

  Fly   258 ---SAPTYEAVGQNRLGHYNLNFQMEHWLLQRVPANKINIGIATYGRSWKMSKDSGDSGMPVVPS 319
               |||.|  .|.......|::....::......|:|.||.|..|...|:...::      |:.|
 Worm   262 AGPSAPIY--FGAQGKSERNVHHTARNYSCLTKQASKFNIVIPFYATLWENVYET------VLDS 318

  Fly   320 TQG----PAPAGPQS-----------KQEGLLNWAEICSLMPNPSNSNARGPNAPVKRVVDPTKR 369
            .:|    .||...::           ||||.  ..|..|..|.|                     
 Worm   319 KRGVYRHVAPFYGRTVGKTYLSRLAVKQEGF--QVESYSYDPAP--------------------- 360

  Fly   370 YGSYAFRAA-DENGDHGLWISYDDPDSASSKAMYARARNLGGVALFDLTQDD----------FRG 423
                  ||| ..|...|::::::..:|..:|..|.:.|.||||.:|.:..||          |.|
 Worm   361 ------RAAFSYNRTIGIYLTFETKESIRAKIDYVKDRILGGVWIFSVDMDDETNSQLKAVSFDG 419

  Fly   424 QCT 426
            .||
 Worm   420 FCT 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Idgf3NP_001285982.1 GH18_IDGF 26..440 CDD:119352 96/441 (22%)
Glyco_18 27..419 CDD:214753 90/421 (21%)
chil-23NP_001254212.1 Glyco_18 74..405 CDD:214753 89/414 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164498
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.