Sequence 1: | NP_001285981.1 | Gene: | CG5888 / 34980 | FlyBaseID: | FBgn0028523 | Length: | 455 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001070902.1 | Gene: | Lrrc52 / 289199 | RGDID: | 1312014 | Length: | 314 | Species: | Rattus norvegicus |
Alignment Length: | 232 | Identity: | 52/232 - (22%) |
---|---|---|---|
Similarity: | 82/232 - (35%) | Gaps: | 82/232 - (35%) |
- Green bases have known domain annotations that are detailed below.
Fly 37 KEPNLCECQEQEIKCENLQLHS-------DNLQLYGISCSIFDARGFGYIPPLKVGNIGSLIVQN 94
Fly 95 CAIPNAESIKYLLSKLGVSNYTELEIFNYFDPKKTDRGEVLQQHYTDHESLKKVSIIGFKSTLPE 159
Fly 160 NFLENLPALQQLSLKGSSDLPGNILHPLKNLTHLEIVVKNLGKVSGAIFAKQSKLKHLMIDCDAK 224
Fly 225 NSSVEM---SAFGPQELWHMTELQSIEL------FNC 252 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CG5888 | NP_001285981.1 | leucine-rich repeat | 168..189 | CDD:275380 | 1/20 (5%) |
leucine-rich repeat | 190..213 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 214..243 | CDD:275380 | 6/31 (19%) | ||
leucine-rich repeat | 244..266 | CDD:275380 | 5/15 (33%) | ||
leucine-rich repeat | 267..289 | CDD:275380 | |||
LRR_8 | 288..348 | CDD:290566 | |||
leucine-rich repeat | 290..313 | CDD:275380 | |||
leucine-rich repeat | 314..337 | CDD:275380 | |||
leucine-rich repeat | 338..357 | CDD:275380 | |||
Lrrc52 | NP_001070902.1 | LRRNT | 26..55 | CDD:214470 | 11/28 (39%) |
leucine-rich repeat | 35..54 | CDD:275380 | 6/18 (33%) | ||
LRR_4 | 56..92 | CDD:289563 | 7/50 (14%) | ||
leucine-rich repeat | 56..78 | CDD:275380 | 5/27 (19%) | ||
LRR_8 | 79..136 | CDD:290566 | 18/100 (18%) | ||
leucine-rich repeat | 79..102 | CDD:275380 | 6/31 (19%) | ||
LRR_4 | 102..>136 | CDD:289563 | 11/68 (16%) | ||
leucine-rich repeat | 103..126 | CDD:275380 | 7/40 (18%) | ||
LRR_8 | 125..185 | CDD:290566 | 19/92 (21%) | ||
leucine-rich repeat | 127..151 | CDD:275380 | 9/47 (19%) | ||
leucine-rich repeat | 152..175 | CDD:275380 | 6/31 (19%) | ||
TPKR_C2 | 184..>222 | CDD:301599 | 2/7 (29%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | LDO | PTHR46473 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.100 |