DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5888 and lrrc52

DIOPT Version :9

Sequence 1:NP_001285981.1 Gene:CG5888 / 34980 FlyBaseID:FBgn0028523 Length:455 Species:Drosophila melanogaster
Sequence 2:XP_002933819.2 Gene:lrrc52 / 100497096 XenbaseID:XB-GENE-6258579 Length:311 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5888NP_001285981.1 leucine-rich repeat 168..189 CDD:275380
leucine-rich repeat 190..213 CDD:275380
leucine-rich repeat 214..243 CDD:275380
leucine-rich repeat 244..266 CDD:275380
leucine-rich repeat 267..289 CDD:275380
LRR_8 288..348 CDD:290566
leucine-rich repeat 290..313 CDD:275380
leucine-rich repeat 314..337 CDD:275380
leucine-rich repeat 338..357 CDD:275380
lrrc52XP_002933819.2 LRRNT 33..63 CDD:214470
leucine-rich repeat 64..86 CDD:275380
LRR <66..>189 CDD:227223
leucine-rich repeat 87..107 CDD:275380
LRR_8 110..169 CDD:338972
leucine-rich repeat 110..133 CDD:275380
leucine-rich repeat 134..158 CDD:275380
leucine-rich repeat 159..182 CDD:275380
PCC 163..>224 CDD:188093
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR46473
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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