DRSC/TRiP Functional Genomics Resources

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Protein Alignment Idgf2 and lmd-4

DIOPT Version :9

Sequence 1:NP_477257.2 Gene:Idgf2 / 34979 FlyBaseID:FBgn0020415 Length:440 Species:Drosophila melanogaster
Sequence 2:NP_504862.2 Gene:lmd-4 / 179121 WormBaseID:WBGene00017233 Length:2011 Species:Caenorhabditis elegans


Alignment Length:479 Identity:103/479 - (21%)
Similarity:181/479 - (37%) Gaps:164/479 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 ASTEAAS---NLVCYYDSSSYTREGLGKLLNPDLEIA---LQFCSHLVYGYAGLRGENLQAYSMN 74
            :|..|||   .:|.||       .|.|     |.||.   |:..:|:::.:.          :|.
 Worm  1470 SSLPAASCGKRIVGYY-------TGWG-----DREITENQLKKLTHVIFAFV----------AMY 1512

  Fly    75 ENLDIYKHQFSEVTS-------LKRKYPHLK-----------VLLSVGG-DHDIDPDHPNKYIDL 120
            |:..:.....||..|       .:|::.::|           ||.:||| |:       ::|...
 Worm  1513 EDGSVKFGAVSEDDSGPQAAKKAERRFLNMKKKARAANSGVRVLFAVGGWDN-------SQYFSS 1570

  Fly   121 LEGEKVRQIGFIRSAYDLVKTYGFDGLDLAYQFP--KNKPRKVHGDLGLAWKSIKKLFTGDFIVD 183
            :..:..::..|:.|....|:....||:||.:::|  ..|..|.|..|      ||::        
 Worm  1571 VAADSGKRKKFVDSIASFVEDQKIDGVDLDWEYPDSNGKDAKNHVQL------IKEI-------- 1621

  Fly   184 PHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPNVNSTWY----FDIPALNGLVDFVNLATFDF 244
                  :|:|:.:.:..|   |.|.::::|.   :....|.    :|:..:....||:|:.|:|:
 Worm  1622 ------REKFSEMAKKKK---RKDPYVITLA---SAAGEWNLRKGYDLKGILKYADFINVMTYDY 1674

  Fly   245 L------------TPARNPEEADYSAPIYHPDGS-KDRLAHLNADFQVEYWLSQGFPSNKINLGV 296
            .            ||          ||:|.  || |.....|||||.::::..:....:::|:||
 Worm  1675 YGAWESKWGAYTGTP----------APLYF--GSLKGFSGKLNADFSMKFYACKTEKPSQLNMGV 1727

  Fly   297 ATYGNAWK-----LTKDSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGN 356
            ..||..||     :.|...:.      .|:.|....::.   |.:.:..:..:..|      ||:
 Worm  1728 PFYGRYWKNVLGPIDKSDNMW------RTAAPQNGKYEG---GYVGWRNLAKEGWN------KGS 1777

  Fly   357 ESPLRRVSDP------TKRFGGIAYRPVDGQITEGIWVSYDDPDSASNKAAYARVKNLGGVALFD 415
            .|...:...|      .|:|.|                 :::..|...|..||..:||||:.::.
 Worm  1778 ASWHEKTKTPYIMNNGAKKFLG-----------------FENERSLKEKMKYATDRNLGGLMIWA 1825

  Fly   416 LSYDD----------FRGQCSGDK 429
            |..||          ..|.|||.|
 Worm  1826 LDLDDDADTLLNLVSSAGLCSGGK 1849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Idgf2NP_477257.2 GH18_IDGF 23..440 CDD:119352 99/469 (21%)
lmd-4NP_504862.2 LysM 25..65 CDD:197609
LysM 79..120 CDD:197609
LysM 142..185 CDD:197609
LysM 209..250 CDD:197609
LysM 270..313 CDD:197609
LysM 334..377 CDD:197609
LysM 401..444 CDD:197609
LysM 469..509 CDD:197609
LysM 550..590 CDD:197609
LysM 635..678 CDD:197609
LysM 710..750 CDD:197609
LysM 760..802 CDD:197609
LysM 876..919 CDD:197609
Self-incomp_S1 1359..1433 CDD:283566
Glyco_18 1480..1825 CDD:214753 91/443 (21%)
GH18_chitinase-like 1481..1824 CDD:299167 91/441 (21%)
ChtBD1_GH18_2 1873..1924 CDD:211315
ChtBD1_GH18_2 1951..2002 CDD:211315
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164434
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.700

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