DRSC/TRiP Functional Genomics Resources

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Protein Alignment CaBP1 and Tmx4

DIOPT Version :9

Sequence 1:NP_001285979.1 Gene:CaBP1 / 34976 FlyBaseID:FBgn0025678 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_083424.1 Gene:Tmx4 / 52837 MGIID:106558 Length:335 Species:Mus musculus


Alignment Length:196 Identity:48/196 - (24%)
Similarity:77/196 - (39%) Gaps:33/196 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ILLLAFVVGSV------SAFYSPSDGVVELTPSNFDREVLKDDAIWVVEFYAPWCGHCQSLVPEY 65
            :||.|::..:.      :|..:....|..:|.||:   .|..:..|:::||||||..||....|:
Mouse     9 VLLAAWLAAAAAEGLEQAALPAEESRVQPMTASNW---TLVMEGEWMLKFYAPWCPSCQQTDSEW 70

  Fly    66 KKLAKALKGV-VKVGSVNADADSTLSGQFGVRGFPTIKIFGANKKSPTDYNGQRTAKAIAEAALA 129
            :..||..:.: :.||.|:...:..|||:|.|...|.  .|.|.......|.|....:.:....|.
Mouse    71 ETFAKNGETLQISVGKVDVIQEPGLSGRFFVTTLPA--FFHAKDGIFRRYRGPGIYEDLQNYILE 133

  Fly   130 EVKKKVQGVLGGGGGSSSGGSGSSSGDDVIELTEDNFDKLVLNSDDIW-LVEFFA------PWCG 187
            :..:.|:.:.|....:|              ||......|...|..|| |..:|.      .||.
Mouse   134 KKWQSVEPLTGWKSPAS--------------LTMSGMAGLFSISGKIWHLHNYFTVTLGIPAWCS 184

  Fly   188 H 188
            :
Mouse   185 Y 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaBP1NP_001285979.1 PDI_a_P5 26..119 CDD:239299 30/93 (32%)
PDI_a_P5 157..262 CDD:239299 10/39 (26%)
Thioredoxin_6 190..383 CDD:290560
P5_C 271..400 CDD:239281
Tmx4NP_083424.1 Thioredoxin_like 33..133 CDD:294274 30/104 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..316
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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