DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CaBP1 and Pdia4

DIOPT Version :9

Sequence 1:NP_001285979.1 Gene:CaBP1 / 34976 FlyBaseID:FBgn0025678 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_001355685.1 Gene:Pdia4 / 12304 MGIID:104864 Length:699 Species:Mus musculus


Alignment Length:470 Identity:129/470 - (27%)
Similarity:190/470 - (40%) Gaps:139/470 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 DGVVELTPSNFDREVLKDDAIWVVEFYAPWCGHCQSLVPEYKKLAKALKG---VVKVGSVNADAD 86
            :||..|...|||..|...|.: ::||||||||||:...|||:|:|..||.   .:.|..::|.:.
Mouse    58 NGVWVLNDGNFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA 121

  Fly    87 STLSGQFGVRGFPTIKIFGANKKSPTDYNGQRTAKAIAEAALAEVKKKVQGVLGGGGGSSSGGSG 151
            |.|:.:|.|.|:|||||.  .|....||:|.||.:        |:..||:.|        |....
Mouse   122 SMLASKFDVSGYPTIKIL--KKGQAVDYDGSRTQE--------EIVAKVREV--------SQPDW 168

  Fly   152 SSSGDDVIELTEDNFDKLVLNSDDIWLVEFFAP-------------------------------- 184
            :...:..:.||:||||. |:|:.||.||||:||                                
Mouse   169 TPPPEVTLSLTKDNFDD-VVNNADIILVEFYAPWTVALLLFSLSFYQFAVLLSTHTGLLDVNAND 232

  Fly   185 --------------------------WCGHCKNLAPEWAKAAKELKGK---VKLGALDATAHQSK 220
                                      ||||||.||||:.||||||..:   :.|..:|||.....
Mouse   233 KSLMFQQFSVPVGPVLSFSPRRHSKIWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDL 297

  Fly   221 AAEYNVRGYPTIKFFPAGSKRASDAQEYDGGRTASDIVSWASDKHVANVPAPELIEIINESTFET 285
            |..::|.||||:|.|..|  |..|   |:|.|....||.:..::  :..|:.|::.:  :...|.
Mouse   298 AKRFDVSGYPTLKIFRKG--RPFD---YNGPREKYGIVDYMIEQ--SGPPSKEILTL--KQVQEF 353

  Fly   286 ACEGKPLCVVSVL-----PHILDCDAKCRN-----KFLDTLRTLGEKFKQKQWGWAWAEGGQQLA 340
            ..:|..:.::.:.     |..|.......|     ||..|......||.:...|        :|.
Mouse   354 LKDGDDVVIIGLFQGDGDPAYLQYQDAANNLREDYKFHHTFSPEIAKFLKVSLG--------KLV 410

  Fly   341 LEESLEVGGFGYPAMAVVNFKKMKFSVLKGSFSKDGINEFLRDISYGRGHTAPVRG--------- 396
            |....:......|...|::        ::||.....|.:::..      |..|:.|         
Mouse   411 LTHPEKFQSKYEPRFHVMD--------VQGSTEASAIKDYVVK------HALPLVGHRKTSNDAK 461

  Fly   397 --AKKPAIV---SVD 406
              :|:|.:|   |||
Mouse   462 RYSKRPLVVVYYSVD 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaBP1NP_001285979.1 PDI_a_P5 26..119 CDD:239299 41/95 (43%)
PDI_a_P5 157..262 CDD:239299 52/165 (32%)
Thioredoxin_6 190..383 CDD:290560 51/205 (25%)
P5_C 271..400 CDD:239281 23/149 (15%)
Pdia4NP_001355685.1 pdi_dom 63..164 CDD:273454 45/119 (38%)
ER_PDI_fam 173..691 CDD:273457 81/336 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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