DRSC/TRiP Functional Genomics Resources

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Protein Alignment cact and nfkb2

DIOPT Version :10

Sequence 1:NP_476942.1 Gene:cact / 34969 FlyBaseID:FBgn0000250 Length:500 Species:Drosophila melanogaster
Sequence 2:NP_001001840.2 Gene:nfkb2 / 415100 ZFINID:ZDB-GENE-030131-6701 Length:902 Species:Danio rerio


Alignment Length:261 Identity:83/261 - (31%)
Similarity:123/261 - (47%) Gaps:35/261 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 QNDDGDTPLHLACISGSVDVVAALIR---MAPHPCLLNIQNDVAQTPLHLAALTAQPNIMRILLL 287
            |:::||||||||.|.....|...||:   .:|.....|..|.::|.|||||.:|.||.::.:|:.
Zfish   485 QDENGDTPLHLAIIHQKTVVAEQLIKALNSSPQQKFFNKLNKLSQAPLHLAVITKQPKLVEMLMK 549

  Fly   288 AGAEPTVRDRHGNTALHLSCIAGEKQCVRALTEKFGATEIHEAHRQYGHRSNDKAVSSLSY-ACL 351
            :||:|::.||.|.|.|||:...|:...:|.:....|.   |.:|          .::|..: ...
Zfish   550 SGADPSLLDREGRTVLHLAAHTGDDVILRLVLSLLGE---HHSH----------LINSADFTGQY 601

  Fly   352 PADLEIRNYDGERCVHLAAEAGHIDILRILVSHGADINAREGKSGRTPLHIAIEGCNEDLANFLL 416
            |..|.::. |||||            ||:||..||.||..|.|||.|.||:|:......||..|:
Zfish   602 PVHLAVKK-DGERC------------LRLLVEAGAKINMPEQKSGCTALHLAVRDNLLKLACNLI 653

  Fly   417 DECEKLNLETATYAGLTAYQFACIMNKSRMQNILEKRGA----ETVTPPDSDYDSSDIEDLDDTK 477
            .|. |.::...||.|.:....|.......:.::|...||    |...|......|||.::..:.|
Zfish   654 TEL-KADVNACTYGGNSPLHLAASQGSPHLCSMLIAAGADKRIENDEPLFLSSSSSDEDEESEKK 717

  Fly   478 M 478
            :
Zfish   718 L 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cactNP_476942.1 ANKYR <225..464 CDD:440430 79/245 (32%)
ANK repeat 229..263 CDD:293786 14/36 (39%)
ANK repeat 265..296 CDD:293786 13/30 (43%)
ANK repeat 298..324 CDD:293786 7/25 (28%)
ANK repeat 361..393 CDD:293786 13/31 (42%)
ANK repeat 395..425 CDD:293786 11/29 (38%)
nfkb2NP_001001840.2 RHD-n_NFkB2 53..238 CDD:143650
RHD_dimer 246..344 CDD:465045
ANKYR 442..699 CDD:440430 78/240 (33%)
ANK repeat 488..525 CDD:293786 14/36 (39%)
ANK repeat 528..558 CDD:293786 13/29 (45%)
ANK repeat 560..596 CDD:293786 11/48 (23%)
ANK repeat 599..629 CDD:293786 15/42 (36%)
ANK repeat 632..664 CDD:293786 11/32 (34%)
ANK repeat 666..697 CDD:293786 5/30 (17%)
Death_NFkB2_p100 794..867 CDD:176776
Blue background indicates that the domain is not in the aligned region.

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