DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17329 and rfwd3

DIOPT Version :9

Sequence 1:NP_609784.2 Gene:CG17329 / 34958 FlyBaseID:FBgn0028896 Length:162 Species:Drosophila melanogaster
Sequence 2:XP_017948850.2 Gene:rfwd3 / 100492921 XenbaseID:XB-GENE-6041816 Length:752 Species:Xenopus tropicalis


Alignment Length:142 Identity:45/142 - (31%)
Similarity:69/142 - (48%) Gaps:18/142 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 PTEPSNGNLEEQVRKLRDHNLRVKHLNTQRRRILRLLQGKMLQYATLEERLHRIGELVLIAELHS 82
            |.||:...|:..|.:::.....|.:|.|....:...||.:..|...:::.              |
 Frog   200 PAEPAPEELQINVVEVQAEAPAVSNLVTVPESVTLPLQTQTKQKTPVKQL--------------S 250

  Fly    83 GVKTLNQRLDRMVENSTCSICLLPWTDNGIHRLVSLRCGHLFGSSCIHMAIRRN-HRCPICRRRA 146
            .||||....|   |..||:||..|||:.|.|||.:||||||||.:||...::.. .:||.|.::|
 Frog   251 PVKTLPPEED---EGDTCAICFEPWTNAGQHRLSALRCGHLFGFTCIERWLKGGAAKCPQCNKKA 312

  Fly   147 RHFHVRRIYSPS 158
            :...:..:|:.|
 Frog   313 KRADIVVLYARS 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17329NP_609784.2 zf-RING_2 99..143 CDD:290367 23/44 (52%)
rfwd3XP_017948850.2 mRING-C3HGC3_RFWD3 261..309 CDD:319364 24/47 (51%)
WD40 <473..572 CDD:421866
WD40 repeat 477..514 CDD:293791
WD40 repeat 520..558 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1451258at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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