DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pkaap and rgs-5

DIOPT Version :9

Sequence 1:NP_609783.1 Gene:pkaap / 34957 FlyBaseID:FBgn0040079 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_498229.3 Gene:rgs-5 / 175794 WormBaseID:WBGene00004348 Length:492 Species:Caenorhabditis elegans


Alignment Length:648 Identity:147/648 - (22%)
Similarity:254/648 - (39%) Gaps:197/648 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LNYIKRHASRRRSSQDATDAICGQMPAYDVDTNDVAGAGDAANAHKRHSLRSTTSFCDEVFLE-- 64
            |..::|...:.::...||.:               .||....||| |.||.:     |.:.:.  
 Worm     5 LGRLRRKKDKEQNGHTATSS---------------DGAYQNGNAH-RDSLVN-----DHICIPAQ 48

  Fly    65 ------AEEEGGVGTTGGGGGGGGGGGGGGAPSDGISLASNDDIFTYNSRLSMNLASIVNDPNCL 123
                  |::...:|:              |:..:||       |.....:|:.:|..::.|.:.|
 Worm    49 RNSLTVAQQSADIGS--------------GSDHEGI-------IVKQKPQLAFSLDRLLIDSSAL 92

  Fly   124 SYFVQYLDTRQALPLIKFYLDIENFKRAALTQEKEEPEEPPRKAIEQSSPHKDDKDVPELKTLCD 188
            |||:||||:...|.||||::.:|.|| ::.:::.:..:|                          
 Worm    93 SYFIQYLDSTDKLNLIKFWMHVEGFK-SSFSEQIQAAQE-------------------------- 130

  Fly   189 LSMRKPLTDDEKSRIYAETNKQLNRQKSGTDSVLNAELSRASISDAIAIYQKYLIVNASLQVELP 253
            ||:|                                        ||.:||.||:...::..:.||
 Worm   131 LSLR----------------------------------------DAKSIYDKYIDDGSTSSLALP 155

  Fly   254 IVILAHISLLLCGRDKSECSKPIPASCFDEAREFVLEQLERDHVQGFLQSGYYSTYCLELIEGGS 318
            ..|...:.      ||...| |:..||||||::||....|..:...|..|.||..:.||::..| 
 Worm   156 RKIKQIVD------DKLSAS-PLQKSCFDEAQDFVKSLFEYRYFDEFQNSVYYKKHELEVLSDG- 212

  Fly   319 VNIYDVLNSELALFYFTEYLEQRQERECLEFWITAINFRKSFACGEEKEEDRKAAQSDAMIIYDK 383
            .::.|:|..:..|..|.|:::::::.:.::|.:...:|..:....|:.|     |..|||.:|:|
 Worm   213 CSLADILKVQPLLLSFLEFIKEKEDHDTIQFLLGCDSFEANLDLMEDSE-----ALGDAMALYEK 272

  Fly   384 YFSLQSECRLWMSQKLRLRVEQAIC----APNEQWQAFDLALLVTAKYLEQKYFADFLKSHIFDN 444
            |||:|:...:.:...:|..:|..||    .||.  :||..|.......|..||.:||||:..:.|
 Worm   273 YFSMQATNMIDLGSAIRAEMESLICEESGRPNR--KAFRTAKTACFFRLHDKYLSDFLKTSYYHN 335

  Fly   445 YVNELKVKRDNSTTHPNLQHTLSLRRAGKSSNGQQQRHRKTLSMSDCTHISQHNTLLASMDQAPS 509
            |:.||:...|.:...|                      ||.           .|...:|.|.|.|
 Worm   336 YLGELQSFIDFTVELP----------------------RKV-----------RNRAASSSDVASS 367

  Fly   510 KTALNHQ-SGNLNIDARQLTNPQLLWQRPVG--------------ALKFGFVNSLGRYERDFEAV 559
            ..:|.|. |.:|.:..:::.:.....|.|.|              :.:...|:.:|||...::  
 Worm   368 TDSLTHAFSRHLEVLEKKMNDKDESTQTPTGSPSSSKRSTPRTPRSSRLAEVDEMGRYHALYD-- 430

  Fly   560 DAVALKSQPWSLSVSGSKLKNAMRKLVNLPEDNV--QEEIAWQVAEMIVRDVTSVTLSGKTPP 620
            |:.:...|      ...::|:.:||.:   :.|.  :||||.:||..|:||:..:..|....|
 Worm   431 DSHSQTPQ------KPMRIKSTLRKYL---DKNTLREEEIAEEVARTIIRDMQEMVASSAESP 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkaapNP_609783.1 RGS 109..308 CDD:295367 49/198 (25%)
RGS_AKAP2_2 324..444 CDD:188676 34/123 (28%)
AKAP10_AKB 561..605 CDD:214003 11/45 (24%)
rgs-5NP_498229.3 RGS 81..203 CDD:279009 48/195 (25%)
RGS 214..336 CDD:214613 35/128 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158862
Domainoid 1 1.000 60 1.000 Domainoid score I7040
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 110 1.000 Inparanoid score I3459
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D288202at33208
OrthoFinder 1 1.000 - - FOG0006831
OrthoInspector 1 1.000 - - oto19266
orthoMCL 1 0.900 - - OOG6_107972
Panther 1 1.100 - - LDO PTHR13155
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3006
SonicParanoid 1 1.000 - - X4922
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.930

Return to query results.
Submit another query.