DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ca-Ma2d and cacna2d3

DIOPT Version :9

Sequence 1:NP_001260486.1 Gene:Ca-Ma2d / 34951 FlyBaseID:FBgn0261999 Length:1215 Species:Drosophila melanogaster
Sequence 2:XP_031757121.1 Gene:cacna2d3 / 101732520 XenbaseID:XB-GENE-13579722 Length:1094 Species:Xenopus tropicalis


Alignment Length:1198 Identity:376/1198 - (31%)
Similarity:584/1198 - (48%) Gaps:198/1198 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 WATQFGDELFALAQKITKSQEIKE----KYKEYNARVELK--NGTELIKSITKNVGRMLARKMDA 116
            ||:.||.|:.::|.|.:.||.:::    ||||:...|.::  :|.:|:|.:.|::..|..:|.:|
 Frog    44 WASAFGGEIKSIAAKYSGSQLLQKSVFTKYKEFEKDVTIEEIDGLQLVKKLAKDMEEMFHKKSEA 108

  Fly   117 VRCIQERAE--YVNENFEFNLTYALQNFTYFSSKYSTFNGNSSEELEPNEAEFAWMYRNMELNPD 179
            ||.:.|.||  ::...|:.:|.|     .||::...    |..:|    :..|..:.:...|.|:
 Frog   109 VRRLVEAAEDAHLKHAFDADLQY-----EYFNAVLI----NERDE----DGNFLELGKEFLLLPN 160

  Fly   180 THFYNTPVDTEHSSVHVPSNIWDRSERVLKTIMWSEHLDEVFRQNYQSDPALSWQYFGSDTGILR 244
            .||.|.||:...|.|.||:|::::...::..|.|||.|::||..|:..||:|.||||||..|..|
 Frog   161 DHFNNLPVNVSLSDVQVPTNVYNKDPEIVNGIYWSEALNKVFVDNFDRDPSLIWQYFGSAKGFFR 225

  Fly   245 HYPAAQWTDTRPNRDDADTYDCRKRSWYIETATCSKDIVILLDHSGSMTGFRHHVAKFTIRSILD 309
            .||..:|   .|:.:....:|||.|.|||:.||..||:|||:|.||||.|.|..:||.|:.||||
 Frog   226 QYPGIKW---EPDENGVIAFDCRNRKWYIQAATSPKDVVILVDVSGSMKGLRLTIAKQTVSSILD 287

  Fly   310 TFSNNDFFTILRYSSEVNDIIPCFNGALVQATPENIEVFNQQIEQLDDPEGYANLTLAYETAFQL 374
            |..::|||.|:.|:.|:..:.||.||.||||...|.|.|.:.:::| ..:|...|.:|...||.|
 Frog   288 TLGDDDFFNIIAYNEEIQYVEPCLNGTLVQADRNNKEHFREHLDKL-YAKGIGMLDIALNEAFDL 351

  Fly   375 LRKYYDSRHCVTNSTCNQAIMLVTDGVAGNTTEVFQKYNWGNGENGTSQMDTRVFTYLLGKEVTK 439
            |.::   .|....|.|:|||||:.||.......:|.||||.:.:       .|:||||:|:|...
 Frog   352 LSEF---NHSGEGSVCSQAIMLIADGAVDTYDNIFAKYNWPDRK-------VRMFTYLIGREAAF 406

  Fly   440 VREIQWMACLNRGYYSHVQTLDEVHEEVLKYVDVIATPLVLQNEQHPPTWTHAFTDKTYD--PKT 502
            ...::||||.|:|:::.:.||.:|.|.|:.|:.|::.|.|: :::|...||.|:.|.|..  .|.
 Frog   407 ADNMKWMACANKGFFTQISTLADVQENVMAYLHVLSRPKVI-DQEHDVVWTEAYVDSTLPQAQKL 470

  Fly   503 SNEKRPRLMISVGVPAFDRFYRHANSTNPRARLLGVAGTDVPVEDIDKLTLPYKLGVNGYSFVVS 567
            ::::...||.:|.:|.|.|    .|.|..:..||||.||||||:::.|....||||::||:|.::
 Frog   471 ADDQGLVLMTTVAMPVFSR----QNETRSKGVLLGVVGTDVPVKELMKAIPKYKLGIHGYAFAIT 531

  Fly   568 NNGYVLLHPDLRPIGTNGK--MNPNYNSIDFTEVEHLFEDQSPREPGESILHIRNAMVRHEANEF 630
            ||||:|.||:|||:...||  ..|||:|:|.:|||  :||:      :.:|  |||||..:..:|
 Frog   532 NNGYILTHPELRPLYEEGKKRRKPNYSSVDLSEVE--WEDR------DDVL--RNAMVNRKTEKF 586

  Fly   631 KSISVKFHYDKMRRVSEEKQDYFFAPLPNTPFTLGIVMPSEYGKTW----IKVGEEVDKNKHMKI 691
             |:.||...||.:||.....||::..:..|||:||:|:...:||.:    :.:.|.:...:|..:
 Frog   587 -SMEVKKTVDKGKRVLVMTNDYYYTDIKGTPFSLGVVLSRGHGKYFFRGNVTIEEGLHDLEHPDV 650

  Fly   692 NISDFFIGENWKVHPDWVYCKYHYLEGHEFKTPEAELREFLAKMQNDWKWSEQYAEDESDWDDKD 756
            :::|           :|.||.......|...|....::.:|.                    .||
 Frog   651 SLAD-----------EWSYCNTDLHPEHRHLTQLEAIKIYLT--------------------GKD 684

  Fly   757 DLNCGRKTLGDDAYYCNKELVNLLIFDAKVTNSSYGVW------RFESDEERQLIERFRADLRFV 815
            .|           ..|:|||:..::|||.|:......|      :.|:.::       ..::.|:
 Frog   685 PL-----------LQCDKELIQEVLFDAVVSAPLEAYWTSLALNKSENSDK-------GVEVAFL 731

  Fly   816 ATMSGLTRWQFIFGEVEVDTDREFGDYHTTAIDE----------TWYKSAILQHHEDRAESFVYS 870
            .|.:||:|.....|..:: |:::|    .|:.|.          .||:.|.    |....|||||
 Frog   732 GTRTGLSRINLFVGAEQL-TNQDF----LTSEDRESIFNADHFPLWYRRAA----EQIPGSFVYS 787

  Fly   871 VKYYDDPMEDSEVKVTASHAIFPRDGGKEAPACVVGFQ----FSHARMWERFFNITAVDHCNHCL 931
            :.:.......|.| ||||.||...|..|......||.|    |...:.|.......::|  ..|.
 Frog   788 IPFSTGSENKSNV-VTASTAIQLLDDRKSPVVAAVGIQMKLEFFQRKFWIASRQCASLD--GKCP 849

  Fly   932 PICTDDDVDCVVIDNNAYIVIGQNINTTGKFFGEFHGDVMTAMVERGIFLSIEVYDYQEQCKEEP 996
            ..|.|::::|.:||||.:|::.::...||.||||..|.||..::..|.|..|.:||||..|:...
 Frog   850 ISCDDEEINCYLIDNNGFILVSEDYGQTGNFFGEVEGAVMNKLLNMGSFKRITLYDYQAVCRTTK 914

  Fly   997 KAGSDGHGLLHPLRLLSLGWKYLVGRLFF---EYQRIQWWADGAPFMEYTDEIEDEYVAVGDGGK 1058
            ::....|.||.|.|.:....|:::..|..   |:....||                    ..|..
 Frog   915 ESSDSAHSLLDPYRAIFTAIKWMMTELILFLVEFNLCNWW--------------------NSGHS 959

  Fly  1059 SSASKPKDDSDDENAMFDEPEPDPIYKACDKRSTLYALQPSALVGINDFVEAPST-------RPF 1116
            ..|.:.|.                :.:.||   |.|    .|.|......|...|       :.|
 Frog   960 VKAQRLKQ----------------VLEPCD---TEY----PAFVSERTIKETTGTVACDDCFKSF 1001

  Fly  1117 LVKKIPNSNLVLVVV-NVLMPSRSVRLTTEPQRMEYDKEFPCYKLNMSFYERRRIEECYTVHEDE 1180
            ::::||:|||.:||| ||...|....:|..|..:.|::...|.:|. |...|||.|.|:..|.:|
 Frog  1002 VIQQIPSSNLFMVVVDNVCSCSSVTPITMAPIEIRYNESLKCERLK-SQKIRRRPEACHGFHPEE 1065

  Fly  1181 ELYTYCGNASRL--VLTLQLMPLTIILV 1206
            .. ..||.|..:  ..|:.|:.|.:|.|
 Frog  1066 NA-RECGGAFSINPRATVVLLGLVMIYV 1092

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ca-Ma2dNP_001260486.1 VWA_N 124..251 CDD:285584 43/128 (34%)
vWA_VGCC_like 267..461 CDD:238740 81/193 (42%)
Cache_1 510..587 CDD:280839 38/78 (49%)
cacna2d3XP_031757121.1 VWA_N 116..232 CDD:400621 43/128 (34%)
vWA_VGCC_like 245..428 CDD:238740 81/193 (42%)
HK_sensor <449..509 CDD:365792 23/63 (37%)
PDC2_MCP_like 511..625 CDD:350337 52/124 (42%)
VGCC_alpha2 658..1071 CDD:400667 125/507 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 129 1.000 Domainoid score I5180
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000496
OrthoInspector 1 1.000 - - mtm9510
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X365
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.000

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