DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ca-alpha1D and SCN3A

DIOPT Version :9

Sequence 1:NP_723952.2 Gene:Ca-alpha1D / 34950 FlyBaseID:FBgn0001991 Length:2705 Species:Drosophila melanogaster
Sequence 2:NP_008853.3 Gene:SCN3A / 6328 HGNCID:10590 Length:2000 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ca-alpha1DNP_723952.2 Ion_trans 767..1042 CDD:395416
Ion_trans 1137..1379 CDD:395416
Ion_trans 1496..1809 CDD:395416
Ion_trans 1851..2126 CDD:395416
GPHH 2135..2188 CDD:407139
Ca_chan_IQ 2199..2271 CDD:400901
SCN3ANP_008853.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..60
I. /evidence=ECO:0000305 110..455
Ion_trans 149..434 CDD:278921
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 493..528
Na_trans_cytopl 510..629 CDD:288761
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 587..631
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 662..681
II. /evidence=ECO:0000305 742..1014
Ion_trans 777..972 CDD:278921
Na_trans_assoc 998..1200 CDD:284034
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1118..1162
III. /evidence=ECO:0000305 1188..1499
Ion_trans 1223..1477 CDD:278921
Na_channel_gate 1469..1521 CDD:240441
IV. /evidence=ECO:0000305 1508..1806
Ion_trans 1543..1781 CDD:278921
ChtBD1 1708..>1743 CDD:302575
GPHH 1793..1848 CDD:293510
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1949..2000
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.