DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ca-alpha1D and tpcn1

DIOPT Version :9

Sequence 1:NP_723952.2 Gene:Ca-alpha1D / 34950 FlyBaseID:FBgn0001991 Length:2705 Species:Drosophila melanogaster
Sequence 2:XP_695923.4 Gene:tpcn1 / 567534 ZFINID:ZDB-GENE-060526-199 Length:811 Species:Danio rerio


Alignment Length:888 Identity:185/888 - (20%)
Similarity:337/888 - (37%) Gaps:222/888 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   686 GGGNNIMGIDSMGIANIPETMNGTTIGPSGAGGQKGGAAAGAAGQKR--------QQRRGKPQPD 742
            |.||:             :.:|..||..|||...:...:...:.:..        |:.....:..
Zfish    34 GAGNH-------------DVVNNVTIPASGASDPRAQNSLQQSWEMNFQEAAIYLQEGENNDKFF 85

  Fly   743 RPQRALFCLSVKNPLRALCIRIVEWKPFEFLILLTIFANCIALAVYTPYPGSDSNVTNQTLEKVE 807
            ...|:...||......:....:||......|:||:     ::.|...|:...|..| :.||   |
Zfish    86 THPRSAHALSAYLFAHSHLFYVVELLTAVLLMLLS-----LSEAPAVPFLRLDVYV-HATL---E 141

  Fly   808 YVFLVIFTAECVMKILAYGFVLHNGAYLRNGWNLLDFTIVVIGAISTALSQLMKDAFDVKALRAF 872
            .:.||:...|..||:...||  |  .::|:...::..:::.|..|. |:..|::   ....||..
Zfish   142 LLALVMVAFELCMKLRWLGF--H--TFIRHKRTMVKTSVLFIQFIE-AIVVLVR---QTSHLRVT 198

  Fly   873 RVLRPLRLVS----GVPSLQVVLNSILKAMVPLFHIALLVLFVIIIYAIIGLELFSGKLHKACRD 933
            |.|||:.||.    |  :::..|..|.:::.|...|.||:||.::|:||:|..|||.        
Zfish   199 RALRPIFLVDCRYCG--AVRRNLRQIFQSLPPFIDILLLLLFFMVIFAILGFCLFSA-------- 253

  Fly   934 EITGEYEENIRPCGVGYQCPPGYKCYGGWDGPNDGITNFDNFGLAMLTVFQCVTLEGWTDVL--- 995
                                            |.....|.....:::::|..:|...:.||:   
Zfish   254 --------------------------------NTADHYFSTLENSIVSLFVLLTTANFPDVMMPA 286

  Fly   996 YSIQDAMGSDWQWMYFISMVILGAFFVMNLILGVLSGEFS-KERNKAKN---------RGDFQKL 1050
            ||     .:.|..::||..:.:..:|:|||:|.|:...|: .|:.|.|:         ...||.|
Zfish   287 YS-----KNRWSCIFFIVYLSIELYFIMNLLLAVVFDTFNGVEKMKFKSLLLHKRSAIEHAFQLL 346

  Fly  1051 REKQQIEEDLRGYLDWITQAEDIEPDAVGGLISDGKGK------QPNE----MDSTENLGEEMPE 1105
            ..:|:                   ||.|.....||..:      .|.:    ..:..:.|..|..
Zfish   347 VSRQR-------------------PDGVSLKQFDGLMRFYHPRMTPRDRFLTFKALNHSGAPMLS 392

  Fly  1106 VQ-------MTESRWRKMKK------DFDRVNRRMRRACRKAVKSQAF------------YWLII 1145
            :|       :...:|:..:.      |..|....:.:.....|||:||            .|:::
Zfish   393 LQDFYKFYEVIGLKWKARRSGEHWFDDLPRTALLIFKGINLLVKSKAFQYAMYLVVAVNGIWILV 457

  Fly  1146 VLVFLNTGVLATEHYGQLDWLDNFQEYTNVFFIGLFTCEMLLKMYSLGFQGYFVSLFNRFDCFVV 1210
            ....||.|:..|.   .:.|       :.:.|:.::..|:|||:..||...||.|.:|.||..|.
Zfish   458 ETNMLNDGISWTR---VVPW-------SYIIFLTIYGIEVLLKITGLGPITYFSSGWNLFDFSVT 512

  Fly  1211 IGSITETLLTNTGMMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLF 1275
            :.:....:.....|.|...:.|||.::|||:||:.:.:|   |::.::......:|||.|.|.:|
Zfish   513 VFAFLGLIALAFDMEPFYFIVVLRPLQLLRLFKIKQRYR---NVLDTMFELFPRMASLGLTLIIF 574

  Fly  1276 IVIFALLGMQVFGGKF----------------------NFDGKEEKYRM--NFDCFWQALLTVFQ 1316
            ...||::||:.|....                      |....:|.|..  ||:....:.:|:|:
Zfish   575 YYSFAIVGMEFFADVIYPNCCDNSTVAASYRQINVTTGNRTELQEGYYYLNNFNNILSSFVTLFE 639

  Fly  1317 IMTGEDWNAVMYVGINAYGGVSSYGA-LACIYFIILFICGNYILLNVFLAIAVDNLADADSLSEV 1380
            :....:|...|       .||:|... .:.:||:..:|. ..:::.:.:|..:|  |....::..
Zfish   640 LTVVNNWYITM-------EGVTSQTTHWSRLYFMTFYIV-TMVVMTIIVAFILD--AFVFRMNYS 694

  Fly  1381 EKEEEPHDESAQKKSHSPTPTIDGMDDHLSIDIDMEQQE-LDDEDKMDHETL---SDEEVREMCE 1441
            .|..||.|:...:|.             :..:.::.|.| |...|...| ||   :...:::||.
Zfish   695 RKNREPLDDPEDEKG-------------IVFETEVSQTEALQTLDFYKH-TLGVTNLTSLQDMCV 745

  Fly  1442 EEEEVDEEGMITARPRRMSEVNTATKILPIPPGTSFFLFSQTN 1484
            ..|...:..::....|..::.:.:.|:........:..:|:||
Zfish   746 ALERSGQTSLVFLGRRSRTKSDLSMKMYEEEIQEWYEEYSRTN 788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ca-alpha1DNP_723952.2 Ion_trans 767..1042 CDD:395416 67/282 (24%)
Ion_trans 1137..1379 CDD:395416 64/278 (23%)
Ion_trans 1496..1809 CDD:395416
Ion_trans 1851..2126 CDD:395416
GPHH 2135..2188 CDD:407139
Ca_chan_IQ 2199..2271 CDD:400901
tpcn1XP_695923.4 Ion_trans 139..325 CDD:278921 58/243 (24%)
Ion_trans 477..688 CDD:278921 55/223 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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