DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ca-alpha1D and Catsper2

DIOPT Version :9

Sequence 1:NP_723952.2 Gene:Ca-alpha1D / 34950 FlyBaseID:FBgn0001991 Length:2705 Species:Drosophila melanogaster
Sequence 2:NP_001012220.1 Gene:Catsper2 / 366174 RGDID:1307620 Length:584 Species:Rattus norvegicus


Alignment Length:476 Identity:114/476 - (23%)
Similarity:201/476 - (42%) Gaps:103/476 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  1041 AKNRGDFQ---------KLREKQQIEEDLRGYLDWI---TQAEDIEPDAVGGLISDGKGKQPNEM 1093
            |..||..|         ||.:...:.|.|:|....:   |..|.::|.....|:           
  Rat     2 AHERGHLQLPRADAIRSKLIDTFSLIEHLQGLSQAVPRHTLREILDPACQKKLM----------- 55

  Fly  1094 DSTENLGEEMPEVQMTESRWRKMK--KDFDRVNRRMRRACRK----------AVKSQAFYWLIIV 1146
                 ||::...|:.: .|.|:|.  ....|:..|:|..|..          .:.|..|...||.
  Rat    56 -----LGDQEQLVRFS-IRARRMGHITHAQRLLSRLRVRCGGRPPLSLWAGWVLDSSIFSNFIIS 114

  Fly  1147 LVFLNTGVLATEHYGQLDWLDNFQ----------EYTNVFFIGLFTCEMLLKMYSLGFQGYFVSL 1201
            |:||||.||..|    ::.:::..          |.|:.|.:..|..|:|| |:...|..::.:.
  Rat   115 LIFLNTFVLMVE----IELMNSTNTSLWPLKLALEVTDWFILLSFIVEILL-MWLASFFLFWKNA 174

  Fly  1202 FNRFDCFVVIGSITETLLTNTGMMPP----LGVS-------VLRCVRLLRVFKVTKYWRSLSNLV 1255
            ::.|| |||      |:|:   ::|.    :|||       :||..|:||..|:...:..:..::
  Rat   175 WSVFD-FVV------TMLS---LLPEFVVLIGVSADSVWLQLLRVSRVLRSLKLFARFPQIKVIL 229

  Fly  1256 ASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNFDGKEEKYRMNFDCFWQALLTVFQIMTG 1320
            .:|:.:::|:..||:||.:|..:||:.|:..|........:..:|.|.|.....:|:|||.:.|.
  Rat   230 LALVRALKSMTFLLMLLLIFFYVFAVAGVYFFKEYSRSTIENLEYNMFFSDLLNSLVTVFILFTL 294

  Fly  1321 EDWNAVMYVGINAYGGVSSYGALACIYFIILFICGNYILLNVFLAIAVDNLADA-----DSLSEV 1380
            :.|.||:.   :.:....:....:.||.|:..:.|:.|..|:.:|:.|.|..:.     :.::.:
  Rat   295 DHWYAVLQ---DVWKVPEASRVFSSIYVILWLLLGSIIFRNIIVAMMVTNFQNIRNELHEEMTHL 356

  Fly  1381 E-----------------KEEEPHDESAQKKSHSPTPTIDGMDDHLSIDIDMEQQELDDEDKMDH 1428
            |                 :.|.....|..|.|...|.|.:..|:..| :.:..::|..:|:|.|.
  Rat   357 EVQYKADIFKRRIIQRRQQSESLRGTSQGKVSEDITETSEATDEEKS-EAEESEEEKSEEEKSDV 420

  Fly  1429 ETLSDEEVREMCEEEEEVDEE 1449
            |...:|:..|...:|||.|||
  Rat   421 EKSDEEKNDEEKSDEEENDEE 441

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity