Sequence 1: | NP_723952.2 | Gene: | Ca-alpha1D / 34950 | FlyBaseID: | FBgn0001991 | Length: | 2705 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_062139.2 | Gene: | Scn8a / 29710 | RGDID: | 3638 | Length: | 1978 | Species: | Rattus norvegicus |
Alignment Length: | 1998 | Identity: | 484/1998 - (24%) |
---|---|---|---|
Similarity: | 838/1998 - (41%) | Gaps: | 559/1998 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 747 ALFCLSVKNPLRALCIRIVEWKPFEFLILLTIFANCIALAVYTPYPGSDSNVTNQTLEKVEYVFL 811
Fly 812 VIFTAECVMKILAYGFVLHNGAYLRNGWNLLDFTIVVIGAISTALSQLMKDAFDVKALRAFRVLR 876
Fly 877 PLRLVSGVPSLQVVLNSILKAMVPLFHIALLVLFVIIIYAIIGLELFSGKLHKAC---------- 931
Fly 932 ------RDEITGEYEEN----------IRP--CG----VGYQCPPGYKCYGGWDGPNDGITNFDN 974
Fly 975 FGLAMLTVFQCVTLEGWTDVLYSIQDAMGSDWQWMYFISMVILGAFFVMNLILGVLSGEFSKERN 1039
Fly 1040 KAKNRGDFQKLREKQQIEEDLRGYLDWI-------------TQAEDIEPDAVGGLISDGKG---- 1087
Fly 1088 ---------------------KQPNEMDSTENLGEEMPE-VQMTESRWRKMKKDF----DRVNR- 1125
Fly 1126 ----------------------------------------------------------------- 1125
Fly 1126 ---RMRRA----------C----------RKAVKSQAF--------------------------- 1140
Fly 1141 ----------------------------------------------------------------- 1140
Fly 1141 -YWL------------------IIVLVFLNTGVLATEHYGQLDWLDNFQEYTNVFFIGLFTCEML 1186
Fly 1187 LKMYSLGFQGYFVSLFNRFDCFVVIGSITETLLTNTGMMPPLGVSVLRCVRLLRVFKVTKYWRSL 1251
Fly 1252 SNLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGG-------KFNFDGKEEKYRMNFDCFWQ 1309
Fly 1310 ALLTVFQIMTGEDWNAVMYVGINAYGGVSSYGALACIYFIILFICGNYILLNVFLAI-----AVD 1369
Fly 1370 NLADAD----------SLSEVEK-----------------------EEEPHDESAQKKSH----- 1396
Fly 1397 -------------SPTPTIDGM----------DDHLSI-------------------------DI 1413
Fly 1414 DMEQQELDDEDKMDHETLSDE--------EVREMCEE--EEEVDEEGMIT---ARPRRMSEVNTA 1465
Fly 1466 TKILPIPPGTSFFLFSQTNRFRVFCHWLCNHSNFGNIILCCIMFSSAMLAAEN-PLRANDDLNKV 1529
Fly 1530 LNKFDYFFTAVFTIELILKLISYGFVLHDGAFCRSAFNLLDLLVVCVSLISLVSSS---NAISVV 1591
Fly 1592 KILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQLFKYVVKCVV 1656
Fly 1657 VAIKTIGNIMLVTYLLQFMFAVIGVQLFKGKFFKCTDGSKMTQDECYGTYLVYDDGDVHK---PR 1718
Fly 1719 LREREWSNNRFHFDDVAKGMLTLFTVSTFEGWPGLLYVSIDSNKENGGPIHNFRPIVAAYYIIYI 1783
Fly 1784 IIIAFFMVNIFVGFVIVTFQNE----GEQEYKNCDLDKNQRNCIEFALKAKPVRRYIPK--HGIQ 1842
Fly 1843 YKVWWFVTSSSFEYTIFILIMINTVTLAMKFYNQPLWYTELLDALNMIFTAVFALEFVFKLAAFR 1907
Fly 1908 FKNYFGDAWNVFDFIIVLGSFIDIVYSEIKSKDTSQIAECDIVEGCKSTKKSAGSNLISINFFRL 1972
Fly 1973 FRVMRLVKLLSKGEGIRTLLWTFIKSFQALPYVALLIVLLFFIYAVVGMQVFGKIALDGGNAITA 2037
Fly 2038 NNNFQTFQQAVLVLFRSATGEAWQEIMMSCSAQPDVKCDMNSDTPGE----PCGS-SIAYPYFIS 2097
Fly 2098 FYVLCSFLIINLFVAVIMDNFDYLTRDWS-ILGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLR 2161
Fly 2162 KISPPLGFGKLCPHRMACKRLVSMNMPLNSDGTVLFNATLFAVVRTSLSIKTDGNIDDANSELRA 2226
Fly 2227 TIKQIWKRTNPKLL--DQVVPPPGNDDE----VTVGKFYATYLIQDYF--RRFKKRKEQEG---- 2279
Fly 2280 --KEGHPDSNTVTLQAGLRTLHEVSPALK----RAISGNLDELDQEPE 2321 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Ca-alpha1D | NP_723952.2 | Ion_trans | 767..1042 | CDD:395416 | 90/306 (29%) |
Ion_trans | 1137..1379 | CDD:395416 | 87/374 (23%) | ||
Ion_trans | 1496..1809 | CDD:395416 | 97/323 (30%) | ||
Ion_trans | 1851..2126 | CDD:395416 | 78/279 (28%) | ||
GPHH | 2135..2188 | CDD:407139 | 13/52 (25%) | ||
Ca_chan_IQ | 2199..2271 | CDD:400901 | 16/79 (20%) | ||
Scn8a | NP_062139.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..20 | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 28..62 | ||||
I. /evidence=ECO:0000305 | 114..442 | 102/351 (29%) | |||
Ion_trans | 131..421 | CDD:395416 | 91/313 (29%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 446..530 | 16/85 (19%) | |||
Na_trans_cytopl | 504..700 | CDD:403218 | 18/197 (9%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 576..597 | 0/20 (0%) | |||
II. /evidence=ECO:0000305 | 733..1005 | 87/284 (31%) | |||
Ion_trans | 750..963 | CDD:395416 | 72/225 (32%) | ||
Na_trans_assoc | 989..1190 | CDD:399489 | 34/212 (16%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1105..1146 | 11/41 (27%) | |||
III. /evidence=ECO:0000305 | 1178..1493 | 104/369 (28%) | |||
Ion_trans | 1195..1471 | CDD:395416 | 96/318 (30%) | ||
Na_channel_gate | 1463..1515 | CDD:240441 | 12/52 (23%) | ||
IV. /evidence=ECO:0000305 | 1502..1799 | 93/320 (29%) | |||
Ion_trans | 1520..1774 | CDD:395416 | 78/277 (28%) | ||
GPHH | 1786..1833 | CDD:407139 | 13/51 (25%) | ||
IQ | 1892..1913 | CDD:197470 | 4/20 (20%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1923..1978 | 12/56 (21%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D172471at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |