Sequence 1: | NP_723952.2 | Gene: | Ca-alpha1D / 34950 | FlyBaseID: | FBgn0001991 | Length: | 2705 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_058943.2 | Gene: | Scn10a / 29571 | RGDID: | 3629 | Length: | 1956 | Species: | Rattus norvegicus |
Alignment Length: | 2089 | Identity: | 515/2089 - (24%) |
---|---|---|---|
Similarity: | 832/2089 - (39%) | Gaps: | 639/2089 - (30%) |
- Green bases have known domain annotations that are detailed below.
Fly 696 SMGIANI----PETMNGTTIGPSGAGGQKGGAAAGAAGQKRQQRRG---KPQPDRPQR------- 746
Fly 747 ----------------------------------------------ALFCLSVKNPLRALCIRIV 765
Fly 766 EWKPFEFLILLTIFANCIALAVYTPYPGSDSNVTNQTLEKVEYVFLVIFTAECVMKILAYGFVLH 830
Fly 831 NGAYLRNGWNLLDFTIVVIGAISTALSQLMKDAFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIL 895
Fly 896 KAMVPLFHIALLVLFVIIIYAIIGLELFSGKLHKAC---------RDEITGEYEEN--IRP---- 945
Fly 946 ---CGVGY---QCPPGYKCYGGWDGPNDGITNFDNFGLAMLTVFQCVTLEGWTDVLYSIQDAMGS 1004
Fly 1005 DWQWMYFISMVILGAFFVMNLILGVLSGEFSKERN------KAKNRGDFQKLREKQQIEEDLRGY 1063
Fly 1064 LDWIT------------------------------------------------------------ 1068
Fly 1069 ----------QAEDIE-PDAVGGLISDG--KGKQ------------------------PNEMDST 1096
Fly 1097 ENLGEE----MPEVQMT-----------------------------------------------E 1110
Fly 1111 S----------------------RWRKMKKD-FDRVNRRMRRACRKAVKSQAFYWLIIVL-VFLN 1151
Fly 1152 TGVLATEHYGQLDWLDNFQEYTNVFFIGLFTCEMLLKMYSLGFQGYFVSLFNRFDCFVVIGSITE 1216
Fly 1217 TLLTNTGMMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFAL 1281
Fly 1282 LGMQVFGGKFNF--DG----KEEKYRMNFDCFWQALLTVFQIMTGEDWNAVMYVGINAYGGVSSY 1340
Fly 1341 GALACIYFIILFICGNYILLNVFLAIAVDNLADADSLSEVEKEEE-------------------- 1385
Fly 1386 ------------------------PHDESAQKKSHSPT--------------------------- 1399
Fly 1400 --------PTIDGMDDHLSIDIDME--------------QQE----------------------- 1419
Fly 1420 -----------------------LDDEDKMDHETLS----DEEVREMCEEEEEVDE------EGM 1451
Fly 1452 ITARPRRMSEVNTATKILPIPPGTSFFLFSQTNRFRVFCHWLCNHSNFGNIILCCIMFSSAMLAA 1516
Fly 1517 E-NPLRANDDLNKVLNKFDYFFTAVFTIELILKLISYGFVLH-DGAFCRSAFNLLDLLVVCVSLI 1579
Fly 1580 SLVS---SSNAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFMFA 1641
Fly 1642 VIGVQLFKYVVKCVVVAIKTIGNIMLVTYLLQFMFAVIGVQLFKGKFFKCTD---------GSKM 1697
Fly 1698 --TQDECY-----GTYLVYDDGDVHKPRLREREWSNNRFHFDDVAKGMLTLFTVSTFEGWPGLLY 1755
Fly 1756 VSIDSNKENGGPIHNFRPIVAAYYIIYIIIIAFFMVNIFVGFVIVTFQNE----GEQEYKNCDLD 1816
Fly 1817 KNQRNCIEFALKAKPVRRYIPKHGIQYK--VWWFVTSSSFEYTIFILIMINTVTLAMKFYNQPLW 1879
Fly 1880 YTELLDALNMIFTAVFALEFVFKLAAFRFKNYFGDAWNVFDFIIVLGSFIDIVYSEIKSKDTSQI 1944
Fly 1945 AECDIVEGCKSTKKSAGSNLISINFFRLFRVMRLVKLLSKGEGIRTLLWTFIKSFQALPYVALLI 2009
Fly 2010 VLLFFIYAVVGMQVFGKIALDGGNAITANNNFQTFQQAVLVLFRSATGEAWQEIMMSCSAQPDVK 2074
Fly 2075 CD---MNSDTPGEPCGSSIAYPYFISFYVLCSFLI-INLFVAVIMDNFDYLTRD-WSILGPHHLD 2134
Fly 2135 EFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRMACKRLVSMNMPLNSDGTVLFNA 2199
Fly 2200 TLFAVVRTSL-------SIKTD-------GNIDDANSELRATIKQIWKRTNPK------------ 2238
Fly 2239 ------LLDQVVPPPGNDDEVTV-GKFYATYLIQDYFRRFKKRKEQEGKEGHPDS-NTVTLQAGL 2295
Fly 2296 RTLHEVSPA 2304 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Ca-alpha1D | NP_723952.2 | Ion_trans | 767..1042 | CDD:395416 | 95/301 (32%) |
Ion_trans | 1137..1379 | CDD:395416 | 81/248 (33%) | ||
Ion_trans | 1496..1809 | CDD:395416 | 103/337 (31%) | ||
Ion_trans | 1851..2126 | CDD:395416 | 89/279 (32%) | ||
GPHH | 2135..2188 | CDD:407139 | 13/52 (25%) | ||
Ca_chan_IQ | 2199..2271 | CDD:400901 | 21/104 (20%) | ||
Scn10a | NP_058943.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 31..54 | 7/22 (32%) | |
I. /evidence=ECO:0000305 | 116..404 | 98/305 (32%) | |||
Ion_trans | 129..406 | CDD:395416 | 95/294 (32%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 441..484 | 0/42 (0%) | |||
Na_trans_cytopl | <482..614 | CDD:403218 | 15/134 (11%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 537..581 | 6/43 (14%) | |||
II. /evidence=ECO:0000305 | 646..910 | 89/288 (31%) | |||
Ion_trans | 663..893 | CDD:395416 | 78/240 (33%) | ||
Na_trans_assoc | 903..1148 | CDD:399489 | 33/257 (13%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1008..1094 | 9/85 (11%) | |||
III. /evidence=ECO:0000305 | 1141..1450 | 108/366 (30%) | |||
Ion_trans | 1152..1428 | CDD:395416 | 102/332 (31%) | ||
Na_channel_gate | 1420..1472 | CDD:240441 | 11/52 (21%) | ||
IV. /evidence=ECO:0000305 | 1459..1758 | 102/319 (32%) | |||
Ion_trans | 1476..1733 | CDD:395416 | 89/277 (32%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1906..1956 | 8/33 (24%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D172471at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |