Sequence 1: | NP_723952.2 | Gene: | Ca-alpha1D / 34950 | FlyBaseID: | FBgn0001991 | Length: | 2705 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038936827.1 | Gene: | Scn5a / 25665 | RGDID: | 3637 | Length: | 2020 | Species: | Rattus norvegicus |
Alignment Length: | 2077 | Identity: | 495/2077 - (23%) |
---|---|---|---|
Similarity: | 851/2077 - (40%) | Gaps: | 615/2077 - (29%) |
- Green bases have known domain annotations that are detailed below.
Fly 747 ALFCLSVKNPLRALCIRIVEWKPFEFLILLTIFANCIALAVYTPYPGSDSNVTNQTLEKVEYVFL 811
Fly 812 VIFTAECVMKILAYGFVLHNGAYLRNGWNLLDFTIVVIGAISTALSQLMKDAFDVKALRAFRVLR 876
Fly 877 PLRLVSGVPSLQVVLNSILKAMVPLFHIALLVLFVIIIYAIIGLELFSGKL-HKACRD--EITG- 937
Fly 938 ----------------------EY-----EENIRPCGVGYQ---CPPGYKCYGGWDGPNDGITNF 972
Fly 973 DNFGLAMLTVFQCVTLEGWTDVLYSIQDAMGSDWQWMYFISMVILGAFFVMNLILGVLSGEFSKE 1037
Fly 1038 RNKA------KNRGDFQKLREKQQIEED---LRGYLDWITQAE-DIEPDA--------------- 1077
Fly 1078 VGGLISDGKGKQP-----------NEMDSTENLG-----------------------------EE 1102
Fly 1103 MPEVQMTESR-------W----------------------------------------------- 1113
Fly 1114 -------RKMKKD---------------------------FDRVNRRMRRACRKAVKSQAF---- 1140
Fly 1141 ------------------------YWL------------------IIVLVFLNTGVLATEHYGQL 1163
Fly 1164 DWLDNFQEYTNVFFIGLFTCEMLLKMYSLGFQGYFVSLFNRFDCFVVIGSITETLLTNTGMMPPL 1228
Fly 1229 GVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNF 1293
Fly 1294 DGKEEKYRMN----------FDCFWQALLTVFQIMTGEDWNAVMYVGINAYGGVSSYGALACIYF 1348
Fly 1349 IILFICGNYILLNVFLAIAVDNLADADSLSEVEKEEEPHD------------------------- 1388
Fly 1389 -------ESAQKKSHS------------PTPTID----------------------GMDDHLSID 1412
Fly 1413 IDMEQQELDDEDKMDHETLSDEEVREMCEEEEEVDEEGMITARPRRMSEVNTAT----------- 1466
Fly 1467 ------KILPIPPG---TSFFLFSQ------TN-------------------------------- 1484
Fly 1485 --------------RFRVFCHWLCNHSNFGNIILCCIMFSSAMLAAENPLRANDDLNKVLNKF-D 1534
Fly 1535 YFFTAVFTIELILKLISYGFVLH-DGAFCRSAFNLLDLLVVCVSLISLVSSS---NAISVVKILR 1595
Fly 1596 VLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQLFKYVVKCVVVAIK 1660
Fly 1661 TIGNIMLVTYLLQFMFAVIGVQLFKGKFFKCTDGSKMTQDECYGTYLVYDD----------GDVH 1715
Fly 1716 KPRLREREWSNNRFHFDDVAKGMLTLFTVSTFEGWPGLLYVSIDSNKENGGPIHNFRPIVAAYYI 1780
Fly 1781 IYIIIIAFFMVNIFVGFVIVTFQNE----GEQEYKNCDLDKNQRNCIEFALKAKPVRRYIPKHGI 1841
Fly 1842 QYKVWWF--VTSSSFEYTIFILIMINTVTLAMKFYNQPLWYTELLDALNMIFTAVFALEFVFKLA 1904
Fly 1905 AFRFKNYFGDAWNVFDFIIVLGSFIDIVYSEIKSKDTSQIAECDIVEGCKSTKKSAGSNLISINF 1969
Fly 1970 F---RLFRVMRLVKLLSKGEGIRTLLWTFIKSFQALPYVALLIVLLFFIYAVVGMQVFGKIALDG 2031
Fly 2032 GNAITANNNFQTFQQAVLVLFRSATGEAWQEIMMSCSAQPDVKCD---MNSDTPGEPCGSSIAYP 2093
Fly 2094 YFISFYVLCSFLI-INLFVAVIMDNFDYLTRD-WSILGPHHLDEFIRLWSEYDPDAKGRIKHLDV 2156
Fly 2157 VTLLRKISPPLGFGKLCPHRMACKRLVSMNMPLNSDGTVLFNATLFAVVRTSLSIKTDGNIDDAN 2221
Fly 2222 SELRATIKQIWKRTNPKLLDQVVPPPGNDDEVTVGKFYATYLIQDYFRRFKKRKEQEGKEGHPDS 2286
Fly 2287 NTVTLQAGLRTLHEVSPA--LKRAISGNLDELDQEPEPMHRRHHTLFGSVWSSIRRHGNGTFRRS 2349
Fly 2350 AKAT------ASQSNGALA--IGGSASAALGVGGSSLVLGSSDPAGGDYLYDTLNRSVADGV 2403 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Ca-alpha1D | NP_723952.2 | Ion_trans | 767..1042 | CDD:395416 | 95/314 (30%) |
Ion_trans | 1137..1379 | CDD:395416 | 83/297 (28%) | ||
Ion_trans | 1496..1809 | CDD:395416 | 97/331 (29%) | ||
Ion_trans | 1851..2126 | CDD:395416 | 88/282 (31%) | ||
GPHH | 2135..2188 | CDD:407139 | 14/52 (27%) | ||
Ca_chan_IQ | 2199..2271 | CDD:400901 | 9/71 (13%) | ||
Scn5a | XP_038936827.1 | Ion_trans | 131..424 | CDD:395416 | 94/308 (31%) |
Na_trans_cytopl | 484..668 | CDD:403218 | 16/183 (9%) | ||
Ion_trans | 717..930 | CDD:395416 | 71/228 (31%) | ||
Na_trans_assoc | 956..1203 | CDD:399489 | 30/246 (12%) | ||
Ion_trans | 1207..1482 | CDD:395416 | 96/326 (29%) | ||
Na_channel_gate | 1474..1526 | CDD:240441 | 10/52 (19%) | ||
Ion_trans | 1531..1785 | CDD:395416 | 88/279 (32%) | ||
GPHH | 1797..1844 | CDD:407139 | 14/51 (27%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D172471at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |