DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ca-alpha1D and cch1

DIOPT Version :9

Sequence 1:NP_723952.2 Gene:Ca-alpha1D / 34950 FlyBaseID:FBgn0001991 Length:2705 Species:Drosophila melanogaster
Sequence 2:NP_593894.1 Gene:cch1 / 2542812 PomBaseID:SPAC6F6.01 Length:1854 Species:Schizosaccharomyces pombe


Alignment Length:1849 Identity:393/1849 - (21%)
Similarity:694/1849 - (37%) Gaps:529/1849 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   737 GKPQP-DRPQRALFCLSVKNPLRALCIRIVEWKPFEFLILLTIFANCIALAVYTPYPGSDSNVTN 800
            |.|:. :.|.|.|       |...:..:|.....:...|.:.|..:.:.|.:.:..|...|    
pombe   160 GPPRANETPGRNL-------PFSPILRQIYNHPLYNIFIFVVIVLHAVLLMIRSDDPHDKS---- 213

  Fly   801 QTLEKVEYVFLVIFTAECVMKILAYGFVLHNG-------------------AYLRNGWNLLDFTI 846
            ||::.:..|..:::|.|.::||..:|| |::|                   :|||:.||.:||..
pombe   214 QTIDYLIIVIGILYTLEMLLKIYLFGF-LYDGSSSFYDFINSYTKKTPRTMSYLRHSWNRVDFVA 277

  Fly   847 VVIGAISTALSQLMKDAFDVKALRAFRVLRPLRLVSGVPSLQVVLNSILKAMVPLFHIALLVLFV 911
            :|...|| .:.:..:..|.:.::.|  .||..||::.....:.:|.|:.::..||..:.....|.
pombe   278 IVALWIS-VIGKKQQGIFRLFSMIA--CLRLTRLLNITRKTETILKSLKESSTPLVQVVSFNAFF 339

  Fly   912 IIIYAIIGLELFSGKLHKACRDEITGEYEENIRPCGVGYQCPPGYKCYGGW-------------- 962
            .::.||:|::.|...|::.|  ...|:|.:.        ..|.|..|.|.|              
pombe   340 GVMIAILGVQFFKASLNRQC--VWLGDYGDQ--------YLPTGQFCGGHWENGIKRAYLDKNGF 394

  Fly   963 --------------------DGPNDGITNFDNFGLAMLTVFQCVTLEGWTDVLYSIQDAMGSDWQ 1007
                                :.|.....:||||..::..:|..::..|:||::|.|.||      
pombe   395 PSNVNPRGFICAEKSVCRVVENPYSNTVSFDNFFNSLELIFVIMSSNGFTDIMYDIMDA------ 453

  Fly  1008 WMYFIS--MVILGAFF----VMNLILGVLSGEFSKERNKAKNRGDFQKLREKQQIEEDLRGYLDW 1066
             .||:|  :.|:.|:|    :|:|::.|::..|...::..||:.: ||..:|..|...|      
pombe   454 -EYFVSCLLFIISAYFLTLWLMSLVIAVVTSSFIDLQHSGKNQKE-QKSVDKHLIRNKL------ 510

  Fly  1067 ITQAEDIEPDAVGGLISDGKGKQPNEMDSTENLGEEMPEVQMTESRWRKMKKDFDRVNRRMRRAC 1131
                                                                            |
pombe   511 ----------------------------------------------------------------C 511

  Fly  1132 RKAVKSQAFYWL-IIVLVFLNTGVLATEHYGQLDWLDN----FQEYTNVFFIGLFTCEMLLKMYS 1191
            .|.:....|.|: .||..|:   .|.|:.|.|.....|    |  |..|.|  |...|::|:.::
pombe   512 EKYLFYSNFIWISFIVAQFV---TLCTQTYDQTSSTANRYLIF--YACVDF--LLAAEVILRFFA 569

  Fly  1192 L--GFQGYFVSLFNRFDCFVVIGSITETLLTNTGMMP-PLG-VSVLRCVRLLRVFKVTKYWRSLS 1252
            .  .::.:|....|..|..:.:.::. |||.:....| ..| :|:....|:.|...:..|.|.::
pombe   570 YLPDYRLFFRRYTNLVDIVLAVLNLV-TLLPSIRKNPVAFGWLSIFAIARIYRCILLIPYTRKIA 633

  Fly  1253 NLVAS----LLNSIQSIASLLLLLFLFIVIF--ALLGMQVFGGKFNFDGKEEKYRMNFDCFWQAL 1311
            .|:.|    |||         |:|||.||:|  :|..:::|....| ||..:...::|...:::.
pombe   634 KLLFSNFKQLLN---------LMLFLVIVLFIASLCAVRLFQDLPN-DGDSDDDAISFATTYESF 688

  Fly  1312 LTVFQIMTGEDWNAVMYVGINAYGGVSSYGALACIYFIILFICGNYILLNVFLAIAVDNLADADS 1376
            |.::||:|.|:|..||: .|.|.........:...:|.:.|:..|.::|::|:|:...|.|.::|
pombe   689 LYMYQILTSENWTDVMF-AIQARLAHLHLSWIPGAFFTLWFLFSNNVVLSMFIAVIQVNFAPSES 752

  Fly  1377 ----------LSEVEKEEEPHDES------AQKKSHSPTPTIDG------MDDHL---------- 1409
                      |:.:.:...|...|      .::.......|:|.      .:|::          
pombe   753 DLKMEQLKMYLARLLRNYNPFQASLTLNALIKRNGSRKGKTVDESHYEWLYEDNIIKGFLRVTNI 817

  Fly  1410 --------SIDIDMEQQELDDEDKMDHETLSDEEVREMCEEE--EEVDEEGMITARPRRMSEVNT 1464
                    |:|...|.      .|.....||:...|.:..::  .:...:.:|..|..:...:.|
pombe   818 PPKEPLKPSLDTSPEL------SKYSLAKLSNNFKRFVMRDDPFSQAYFKRVIGIRWEKDMNLKT 876

  Fly  1465 A---------------TKILPIPP--GTSFFLFSQTNRFRVFCHWLCN---HSNFGNI------- 1502
            |               |:.|...|  ...|::...:||.|.||..|..   :..:|.:       
pombe   877 AAKDMQAAKAFVRIKQTEFLKNHPKYNDVFWVIKPSNRIRRFCQRLVMPGVNERYGGVEPYQWVY 941

  Fly  1503 ------ILCCIMFSSAMLAAENPLRANDDLNKVLN--KFDYF------FTAVFTIELILKLISYG 1553
                  |..||:.:..:.....|:...|.|   ||  :..:|      |..:||||..:|:|:.|
pombe   942 RVIQVFIYACILTAVIIECIATPIYERDHL---LNDKQHAWFVWTEVAFATIFTIEAAIKIIADG 1003

  Fly  1554 FVLHDGAFCRSAFNLLDLLVVCVSLISL--VSSSNAISVVKILRVLRVLRPLRAINRAKGLKHVV 1616
            |.:...|:.||.:|.:|..|:....|:|  |.:|:|: :.:..|..:.||.||.||         
pombe  1004 FCITPNAYLRSTWNCIDFFVLVTLWINLYAVLTSHAL-LSRAFRAFKALRVLRLIN--------- 1058

  Fly  1617 QCVIVAVKTIGNIVLVTCLLQFMF--AVIGVQLFKYVVKCVVVAIKTIGNIMLVTYLLQFMFAVI 1679
                           :|...|.||  |:|. ..||.....||.|          |.|:.  ||:.
pombe  1059 ---------------LTQTSQRMFHDALIS-GFFKIFSAAVVSA----------TLLIP--FALW 1095

  Fly  1680 GVQLFKGKFFKCTDGSKMTQDECYGTYL-VYDDGDVHKPRLREREWSN-NRFHFDDVAKGMLTLF 1742
            ...:|.|..:.|.|.:.::..:|...|. ..::.:|..||:    ||| ..:.||.....:|.||
pombe  1096 AKNVFGGLLYSCNDDNVLSASQCVLEYASTPNNWEVWAPRV----WSNPPDYDFDRFPHALLALF 1156

  Fly  1743 TVSTFEGWPGLLYVSIDSNKENGGPIHNFRPIVAAYYIIYIIIIAFFMVNIFVGFVIVTFQNEGE 1807
            .:::.|||..::...:|....|..|..|.....|.:::::.::...:::.:|:..:|..:.....
pombe  1157 EIASIEGWVDIMRSVMDITGFNNQPQTNASSGNAMFFVLFNLVSMIYILTLFIAIIISNYAERTG 1221

  Fly  1808 QEYKNCDLDKNQRNCIEFALKAKPVRR------------------YIPKHGIQYKVWWFVTSSSF 1854
            ..:...:    ||..:|...|.|.:|.                  .:.||||     |..|.:..
pombe  1222 SAFFTAE----QRAWLELRRKIKSMRPSKRPAIRPLGLRGLCYDFAVQKHGI-----WRRTFTGL 1277

  Fly  1855 EYTIFILIMINTVTLAMKFYNQPLWYTELLDALNMIFTAVFALEFVFKLAAFRFKNYFGDAWNVF 1919
             |.:.:|.::..      ||..|:.||.:.:::.:|.:..:.:....|:....|..:|...||:|
pombe  1278 -YIVHLLFLLTI------FYPCPIAYTYVRNSIFLILSICYTINICVKVYGLSFYYFFHSFWNMF 1335

  Fly  1920 DFIIVLGSFIDIVYSEIKSKDTSQIAECDIVEGCKSTKKSAGSNLISINFFRLFRVMRLVKLLSK 1984
            |.::.|||.                 .|:|....|...:|.  .|:.....    |:..|.|:.|
pombe  1336 DVVVTLGSL-----------------TCNIAILAKFENRSL--TLLQTTLL----VLVTVHLIPK 1377

  Fly  1985 GEGIRTLLWTFIKSFQALPYVALLI---VLLFFIYAVVGMQVFG--KIALDGGNAITANNNFQTF 2044
            .:....|..|.:.|   ||.:..||   ::|:..:|:...|:||  |:.|:||    .|.||::.
pombe  1378 FDNFDQLSKTVVAS---LPSIFSLIATWIVLYITFAIAFNQIFGLTKLGLNGG----PNKNFRSI 1435

  Fly  2045 QQAVLVLFRSATGEAWQEIMMSCS-AQPDVKCDMNSDTPGEPCGSS-IAYPYFISFYVLCSFLII 2107
            :.|:::||....||.|.::|...: :.|:  |....|.....||:. .||..||::.::..::.:
pombe  1436 RNALVLLFTMTFGEGWNDVMHDYTISYPN--CVNGDDFYNSDCGNKPWAYGLFIAWNIISMYIFV 1498

  Fly  2108 NLFVAVIMDNFDYL-TRDWSILGPHHLD--EFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGF 2169
            |:|:.|:.|||.|: |:..|.......|  :|...|:.:||...|.|                  
pombe  1499 NMFITVVFDNFSYIHTKSSSFTNLQRNDFRQFKDSWAPFDPMVTGYI------------------ 1545

  Fly  2170 GKLCPHRMACKRLVSMNMPLNSDGTVLFNATLFAVVRTSLSIKTDGNIDDANSELRATIKQIWKR 2234
                |.|.|.|.::|:....:           |.:.|            |.:: ||:.|.::..:
pombe  1546 ----PKRNAVKFVLSLRGVYD-----------FRIYR------------DEHT-LRSIISKVQSK 1582

  Fly  2235 T---------NP--------KLLDQVVPP-----------------------PGNDDE------- 2252
            |         ||        :.|||::..                       |||...       
pombe  1583 TGQQSVPMLENPLMGSEINLEALDQIIDTIDVNVVKERRNVLNSLCTEIMTLPGNVISFSNILML 1647

  Fly  2253 VTVGKFY---ATYLIQDYFRR------FKKRKEQEGKEG-------------HPDSNTVTLQAGL 2295
            |.:.|..   ..:.|.||.||      .:|....|...|             |.:.....|:...
pombe  1648 VVLHKIVDHREAFPISDYIRRAYVLSELEKSIRMEKLLGLVETSIIRKTFLQHMEEKKKALENPF 1712

  Fly  2296 RTLHEVSPAL-KRAISGNLDELDQEPEPM 2323
            ..|.|||..| :..|...|.:.:.:||.:
pombe  1713 ILLSEVSEILPETPIQEVLRQHNADPEQL 1741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ca-alpha1DNP_723952.2 Ion_trans 767..1042 CDD:395416 73/333 (22%)
Ion_trans 1137..1379 CDD:395416 68/266 (26%)
Ion_trans 1496..1809 CDD:395416 79/339 (23%)
Ion_trans 1851..2126 CDD:395416 70/282 (25%)
GPHH 2135..2188 CDD:407139 11/52 (21%)
Ca_chan_IQ 2199..2271 CDD:400901 22/127 (17%)
cch1NP_593894.1 Ion_trans 201..485 CDD:278921 70/308 (23%)
Ion_trans 533..748 CDD:278921 60/230 (26%)
Ion_trans 968..1220 CDD:278921 74/296 (25%)
Ion_trans 1289..1517 CDD:278921 68/259 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 114 1.000 Domainoid score I1537
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45628
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R175
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.040

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