Sequence 1: | NP_723952.2 | Gene: | Ca-alpha1D / 34950 | FlyBaseID: | FBgn0001991 | Length: | 2705 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038953406.1 | Gene: | Cacna1a / 25398 | RGDID: | 2244 | Length: | 2463 | Species: | Rattus norvegicus |
Alignment Length: | 2487 | Identity: | 858/2487 - (34%) |
---|---|---|---|
Similarity: | 1167/2487 - (46%) | Gaps: | 724/2487 - (29%) |
- Green bases have known domain annotations that are detailed below.
Fly 663 GNGGPGSGDVSRTARYDSGEGDLGGGNNIMGIDSMGIANIPETMNGTTIGPSGAGGQKGGAAAGA 727
Fly 728 AGQKRQQ--RRGK------PQPDRP-----QRALFCLSVKNPLRALCIRIVEWKPFEFLILLTIF 779
Fly 780 ANCIALAVYTPYPGSDSNVTNQTLEKVEYVFLVIFTAECVMKILAYGFVLHNGAYLRNGWNLLDF 844
Fly 845 TIVVIGAISTALSQLMKDAFDVKALRAFRVLRPLRLVSGVPSLQVVLNSILKAMVPLFHIALLVL 909
Fly 910 FVIIIYAIIGLELFSGKLHKACRDEITGEYE-ENIRPCGV---GYQCPPGYKCYGGWDGPNDGIT 970
Fly 971 NFDNFGLAMLTVFQCVTLEGWTDVLYSIQDAMGSDWQWMYFISMVILGAFFVMNLILGVLSGEFS 1035
Fly 1036 KERNKAKNRGDFQKLREKQQIEEDLRGYLDWITQAEDI-----EPDAVGGLISDGKGKQPN-EMD 1094
Fly 1095 STENLGEEMPEVQMTE------------SRWRKMKKD--FDRVNRRMRRACRKAVKSQAFYWLII 1145
Fly 1146 VLVFLNTGVLATEHYGQLDWLDNFQEYTNVFFIGLFTCEMLLKMYSLGFQGYFVSLFNRFDCFVV 1210
Fly 1211 IGSITETLLTNTGMMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLF 1275
Fly 1276 IVIFALLGMQVFGGKFNFDGKEEKYRMNFDCFWQALLTVFQIMTGEDWNAVMYVGINAYGGVSSY 1340
Fly 1341 GALACIYFIILFICGNYILLNVFLAIAVDNLADADSLSEVEKEEE-------------------- 1385
Fly 1386 ----------------------------------------------------------------- 1385
Fly 1386 ---------PHD----------------------ESA---------------------------- 1391
Fly 1392 -QKKSHSP-------------------------TPTIDG-------------------------- 1404
Fly 1405 ----------------------------MDD---------------------HLS----IDIDME 1416
Fly 1417 QQEL---DDEDKM------------DHETLSDE-------------------------------- 1434
Fly 1435 -------------------------------------------EVREMC---------------- 1440
Fly 1441 ----------EEEEEVD--EEGMITARPRRMSEVNTATKILPIPPGTSFFLFSQTNRFRVFCHWL 1493
Fly 1494 CNHSNFGNIILCCIMFSSAMLAAENPLRANDDLNKVLNKFDYFFTAVFTIELILKLISYGFVLHD 1558
Fly 1559 GAFCRSAFNLLDLLVVCVSLISLVSSSNA--------ISVVKILRVLRVLRPLRAINRAKGLKHV 1615
Fly 1616 VQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQLFKYVVKCVVVAIKTIGNIMLVTYLLQFMFAVIG 1680
Fly 1681 VQLFKGKFFKCTDGSKMTQDECYGTYLVYDDGDVHKPRLREREWSNNRFHFDDVAKGMLTLFTVS 1745
Fly 1746 TFEGWPGLLYVSIDSNKENGGPIHNFRPIVAAYYIIYIIIIAFFMVNIFVGFVIVTFQNEGEQEY 1810
Fly 1811 KNCDLDKNQRNCIEFALKAKPVRRYIP--KHGIQYKVWWFVTSSSFEYTIFILIMINTVTLAMKF 1873
Fly 1874 YNQPLWYTELLDALNMIFTAVFALEFVFKLAAFRFKNYFGDAWNVFDFIIVLGSFIDIVYSEIKS 1938
Fly 1939 KDTSQIAECDIVEGCKSTKKSAGSNLISINFFRLFRVMRLVKLLSKGEGIRTLLWTFIKSFQALP 2003
Fly 2004 YVALLIVLLFFIYAVVGMQVFGKIALDGGN--------AITANNNFQTFQQAVLVLFRSATGEAW 2060
Fly 2061 QEIMMSC-SAQPDVKCDMNSDTPGEPCGSSIAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTRD 2124
Fly 2125 WSILGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRMACKRLVSMNMPL 2189
Fly 2190 NSDGTVLFNATLFAVVRTSLSIK-TDGNID--DANSELRATIKQIWKRTNPKLLDQVVPPPGNDD 2251
Fly 2252 EVTVGKFYATYLIQDYFRRFKKRK-----EQEGK---------------EGHPDSNTVTLQAGLR 2296
Fly 2297 TLHEVSPALKRAISGNL----DELDQEPEPMHRRHHTLF--GSVWSSIRRHGNGTFRRSAKATAS 2355
Fly 2356 QSNGALAIGGSASAALGVGGSSLVLGSSDP---------AGGDYLYDTLNRSVADGVNNITRNIM 2411
Fly 2412 QARLAAAGKLQDELQ---GAGSGGELRTFGESISMRPLAKNGGGAATVAG------------TLP 2461
Fly 2462 PEAN-AINYDNRNRG-----ILLHPYNNV----------YAPNGALPGHERMIQSTPASPYDQRR 2510
Fly 2511 L-----------PTSSDMNGLAESLIGGVLAAEGLGKYCDSEFVGTA-AREMREALDMTPEEMNL 2563
Fly 2564 AAHQILSNEHSLSLIGSSNGSIFGGSAGGLGGAGSGGVGGLGGSSSIRNAFGGSGSGPS---SLS 2625
Fly 2626 P-QHQPYSGTLNSPPIP 2641 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Ca-alpha1D | NP_723952.2 | Ion_trans | 767..1042 | CDD:395416 | 147/278 (53%) |
Ion_trans | 1137..1379 | CDD:395416 | 145/241 (60%) | ||
Ion_trans | 1496..1809 | CDD:395416 | 131/320 (41%) | ||
Ion_trans | 1851..2126 | CDD:395416 | 146/283 (52%) | ||
GPHH | 2135..2188 | CDD:407139 | 28/52 (54%) | ||
Ca_chan_IQ | 2199..2271 | CDD:400901 | 30/74 (41%) | ||
Cacna1a | XP_038953406.1 | Ion_trans | 188..462 | CDD:395416 | 147/278 (53%) |
Ion_trans | 578..816 | CDD:395416 | 145/240 (60%) | ||
PHA03247 | <879..1260 | CDD:223021 | 33/397 (8%) | ||
Ion_trans | 1284..1564 | CDD:395416 | 131/318 (41%) | ||
Ion_trans | 1609..1868 | CDD:395416 | 146/283 (52%) | ||
GPHH | 1877..1930 | CDD:407139 | 28/52 (54%) | ||
Ca_chan_IQ | 1941..2014 | CDD:400901 | 29/73 (40%) | ||
PHA03307 | 2040..>2444 | CDD:223039 | 80/428 (19%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D172471at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000179 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100303 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |