DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ca-alpha1D and Catsper1

DIOPT Version :9

Sequence 1:NP_723952.2 Gene:Ca-alpha1D / 34950 FlyBaseID:FBgn0001991 Length:2705 Species:Drosophila melanogaster
Sequence 2:NP_647462.1 Gene:Catsper1 / 225865 MGIID:2179947 Length:686 Species:Mus musculus


Alignment Length:297 Identity:74/297 - (24%)
Similarity:125/297 - (42%) Gaps:73/297 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1840 GIQYKVWWFVTSSSFEYTIFILIMINTVTLAMKFYNQ----PLWYTELLDALNMIFTAVFALEFV 1900
            |:|..:.....|..||..|||::.:|||.|..:.:.:    ..||..:||:   ||.:::.||.|
Mouse   339 GLQQMILSLTQSLGFETFIFIVVCLNTVILVAQTFTELEIRGEWYFMVLDS---IFLSIYVLEAV 400

  Fly  1901 FKLAAFRFKNYFGDAWNVFDFIIVLGSFIDIVYSEIKSKDTSQIAECDIVEGCKSTKKSAGSNLI 1965
            .||.|...: ||.|.||..||.|::.:.:|.|..:|                          |.:
Mouse   401 LKLIALGLE-YFYDPWNNLDFFIMVMAVLDFVLLQI--------------------------NSL 438

  Fly  1966 SINFFR--LFRVMRLVKLLSKGEGIRTL----LWTFIKSFQ-----ALPYVALLIVLLF---FIY 2016
            |.:|:.  |||::::.|.:.....||.|    :.|.:....     :||.:..::.|:|   |::
Mouse   439 SYSFYNHSLFRILKVFKSMRALRAIRVLRRLSILTSLHEVAGTLSGSLPSITAILTLMFTCLFLF 503

  Fly  2017 AVVGMQVFGKIALDGGNAITANNNFQTFQQAVLVLFRSATGEAWQEIMMSCSAQPDVKCDMNSDT 2081
            :||...:|..         :....||.....:..||...|.:.|..|.:...||           
Mouse   504 SVVLRALFQD---------SDPKRFQNIFTTLFTLFTMLTLDDWSLIYIDNRAQ----------- 548

  Fly  2082 PGEPCGSSIAYPYFISFYVLCSFLIINLFVAVIMDNF 2118
                 |:....|..:.:.|:..|:.:||.:||::|||
Mouse   549 -----GAWYIIPILMIYIVIQYFIFLNLVIAVLVDNF 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ca-alpha1DNP_723952.2 Ion_trans 767..1042 CDD:395416
Ion_trans 1137..1379 CDD:395416
Ion_trans 1496..1809 CDD:395416
Ion_trans 1851..2126 CDD:395416 72/286 (25%)
GPHH 2135..2188 CDD:407139
Ca_chan_IQ 2199..2271 CDD:400901
Catsper1NP_647462.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..57
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 97..177
MPLKIP 99..>201 CDD:292140
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 207..271
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 289..318
Ion_trans 386..581 CDD:278921 60/250 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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