Sequence 1: | NP_723952.2 | Gene: | Ca-alpha1D / 34950 | FlyBaseID: | FBgn0001991 | Length: | 2705 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_008765754.2 | Gene: | Cacna1h / 114862 | RGDID: | 68943 | Length: | 2370 | Species: | Rattus norvegicus |
Alignment Length: | 2424 | Identity: | 550/2424 - (22%) |
---|---|---|---|
Similarity: | 891/2424 - (36%) | Gaps: | 824/2424 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 660 SPNGNGGPGSGDVSRTARYDSGEGDLGGGNNIMGIDSMGIANIPETMNGTTIGPSGAGGQKGGAA 724
Fly 725 AGAAGQKRQQRRGKPQPDRPQRALFCLSVKNPLRALCIRIV--EWKPFEFLILLTIFANCIALAV 787
Fly 788 YTPYPGSDSNVTN-QTLEKVEYVFLVIFTAECVMKILAYGFVLHNGAYLRNGWNLLDFTIVVIGA 851
Fly 852 ISTALSQLMKDAFDV--KALRAFRVLRPLRLVSGVPSLQVVLNSILKAMVPLFHIALLVLFVIII 914
Fly 915 YAIIGLELFSGKLHKAC-------RDE---------ITGEYEEN-----------IRPCG----- 947
Fly 948 --VGYQCPPGYKCYG---------------GWD-----------GPNDGITNFDNFGLAMLTVFQ 984
Fly 985 CVTLEGWTDVLYSIQDAMGSDWQWMYFISMVILGAFFVMNLILGVLSGEFSKERNKAKNRGDFQK 1049
Fly 1050 LREKQQ------------------IEE---------------DLRGYLDWITQ-AEDIEPDAV-- 1078
Fly 1079 ----------------------------------------------------------------- 1078
Fly 1079 ---------------------------------------------------------------GG 1080
Fly 1081 LISDGKGKQ-----------------PNEMDSTEN-LGE-------------------------- 1101
Fly 1102 ---------------EMPEVQMTESRWRKMKKDFD------------------------------ 1121
Fly 1122 RVNRRMRRACRKA--------------------VKSQAFYWLIIVLVFLNTGVLATEHYGQLDWL 1166
Fly 1167 DNFQEYTNVFFIGLFTCEMLLKMYSLGFQGYFVSLFNRFDCFVVIGSITETLLTNTGMMPPLGVS 1231
Fly 1232 VLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNF--- 1293
Fly 1294 DGKEEKYRMNFDCFWQALLTVFQIMTGEDWNAVMYVGINAYGGVSSYGALACIYFIILFICGNYI 1358
Fly 1359 LLNVFLAIAVDNL-ADADSLSEVEKEEEPHDE------------SAQKKSHSPTPTIDGMDDHL- 1409
Fly 1410 -----------------------SIDIDMEQQELD---------DEDKMDHETLS---------- 1432
Fly 1433 --------------------DEEVREMCEEEEEV---------DEEGMITARP------------ 1456
Fly 1457 -----RRMSEVNTATKILPIPP------GTSF--------------------------------- 1477
Fly 1478 ---------------------------FLFSQTNRFRVFCHWLCNHSNFGNIILCCIMFSSAMLA 1515
Fly 1516 AENP-LRANDDLNKVLNKFDYFFTAVFTIELILKLISYGFVLHDGAFCRSAFNLLDLLVVCVSLI 1579
Fly 1580 SLV------SSSNAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTCLLQF 1638
Fly 1639 MFAVIGVQLFKYVVKCVVVAIKTIGNIMLVTYLLQFMFAVIGVQLFKGKFFKC--TDGSKM-TQD 1700
Fly 1701 ECYGTYLVYDDGDVHKPRLREREWSNNRFHFDDVAKGMLTLFTVSTFEGWPGLLYVSIDSNKENG 1765
Fly 1766 GPIHNFRPIVAAYYIIYIIIIAFFMVNIFVGFVIVTF----QNEGEQEYKNCD------LDKNQR 1820
Fly 1821 NCIEFALKAKPVRR--YIPKHGIQYKVWWFVTSSSFEYTIFILIMINTVTLAMKFYNQPLWYTEL 1883
Fly 1884 LDALNMIFTAVFALEFVFKLAAFRFKNYFGDAWNVFDFIIVLGSFIDIVYSEIKSKDTSQIAECD 1948
Fly 1949 IVEGCKSTKKSAGSNLISINFFRLFRVMRLVKLLSKGEGIRTLLWTFIKSFQALPYV---ALLIV 2010
Fly 2011 LLFFIYAVVGMQVFGKIALDGGN---AITANNNFQTFQQAVLVLFRSATGEAWQEIM----MSCS 2068
Fly 2069 AQPDVKCDMNSDTPGEPCGSSIAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTRDWSILGPHHL 2133
Fly 2134 DEF---IRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRMACKRLVSMNMPLNSDGTV 2195
Fly 2196 LFNATLFAVVRTS----LSIKTD---------------------------GNIDDANS---ELRA 2226
Fly 2227 TIKQIWKRTNPKLLDQ---VVPPPGNDDEVTVGKFYATY------------------LIQDYFRR 2270
Fly 2271 FKKRKEQEGKEGHPDS----------NTVTLQAGLRTLHEVSPALKRAISGNLDELDQEPEPMHR 2325
Fly 2326 RHHTLFGSVWSSIRRHGNGTFRRSAKATASQSNGALAIGGSASAALGVGGSSLVLGSSDPAGGDY 2390
Fly 2391 LYDTLNRSVADGVNNITRNIMQARLAAAGKLQDELQGAGSGGELRTFGESISMRPLAKNGGGAAT 2455
Fly 2456 VAGTLPPEANAINYDNRNR 2474 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Ca-alpha1D | NP_723952.2 | Ion_trans | 767..1042 | CDD:395416 | 101/337 (30%) |
Ion_trans | 1137..1379 | CDD:395416 | 91/245 (37%) | ||
Ion_trans | 1496..1809 | CDD:395416 | 95/326 (29%) | ||
Ion_trans | 1851..2126 | CDD:395416 | 93/284 (33%) | ||
GPHH | 2135..2188 | CDD:407139 | 6/55 (11%) | ||
Ca_chan_IQ | 2199..2271 | CDD:400901 | 18/126 (14%) | ||
Cacna1h | XP_008765754.2 | None |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D172471at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |