DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ca-alpha1D and cacna1g

DIOPT Version :9

Sequence 1:NP_723952.2 Gene:Ca-alpha1D / 34950 FlyBaseID:FBgn0001991 Length:2705 Species:Drosophila melanogaster
Sequence 2:XP_031750725.1 Gene:cacna1g / 100497283 XenbaseID:XB-GENE-993391 Length:2361 Species:Xenopus tropicalis


Alignment Length:1919 Identity:470/1919 - (24%)
Similarity:767/1919 - (39%) Gaps:647/1919 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   729 GQKRQQRRGKPQPDRPQRALFCLSVKNPLRALCIRIV--EWKPFEFLILLTIFANCIALAVYTPY 791
            |....:..|.|.|.......|.|:.::..|:.|:::|  .|  ||...:|.|..||:.|.::  :
 Frog    14 GDPGSELEGLPYPTLAPVVFFFLTQESRPRSWCLKMVCNPW--FERFSMLVILLNCVTLGMF--H 74

  Fly   792 PGSDSNVTNQTLEKV----EYVFLVIFTAECVMKILAYGFVLHNGAYLRNGWNLLDFTIVVIGAI 852
            |..|....:|..:.:    :::| ..|..|.::|:||.| :.....||.:.||.||..|||.|.:
 Frog    75 PCEDIACDSQRCKILQGFDDFIF-AFFAVEMIIKMLALG-IFGKQCYLGDTWNCLDLVIVVAGML 137

  Fly   853 STALSQLMKDAFDVKALRAFRVLRPLRLVSGVPSLQVVLNSILKAMVPLFHIALLVLFVIIIYAI 917
            ..:| .|....|  .|:|..|||||||.::.|||:::::..:|..:..|.::.||..||..|:.|
 Frog   138 EYSL-DLQNVTF--SAVRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGI 199

  Fly   918 IGLELFSGKLHKAC----------------------RDE---ITGEYEEN-IRPC-------GVG 949
            :|::|::|.|...|                      .||   |..:..|| :|.|       ..|
 Frog   200 VGVQLWAGLLRNRCFLPENFSLPVSLELERYYQTENEDENPFICSQARENGMRYCRNVPAMREDG 264

  Fly   950 YQCPPGY-------------------KCYGGWDGPNDGITNFDNFGLAMLTVFQCVTLEGWTDVL 995
            .:|...:                   .|..|...|..|..||||.|.|.:.:||.:|||||.|::
 Frog   265 LECTLDHYFYNNTSNTSCVNWNQYYTNCSAGEHNPFKGAINFDNIGYAWIAIFQVITLEGWVDIM 329

  Fly   996 YSIQDAMGSDWQWMYFISMVILGAFFVMNLILGVLSGEFSKERNKAKNRGDFQKLR--------- 1051
            |.:.|| .|.:.::|||.::|:|:||::||.|.|::.:||:.:.:.......|::|         
 Frog   330 YFVMDA-HSFYNFIYFILLIIIGSFFMINLCLVVIATQFSETKQRESQLMKEQRVRFLSNASTLA 393

  Fly  1052 ---EKQQIEEDLRGYLDWIT--------------------------------------------- 1068
               |.....::|..||.:||                                             
 Frog   394 SFSEPGSCYDELLKYLVYITRKGSKRLVQFYRAAAFKAGLSARPVVKNSAEKPNRKHRRRRSSVH 458

  Fly  1069 ---------------------------QAEDIE-------------------------------- 1074
                                       :..::|                                
 Frog   459 HLIHHHHHHHHHYHLGNGSLRAPQASPELSEVETSSPHNTSRLMVPFAGSPIASATNTQSIHSIY 523

  Fly  1075 ------------------------PDAVGGLISDGKG------------------KQPNEMDSTE 1097
                                    |:.:...|:.||.                  .:|:|:.|..
 Frog   524 HADCHLEPVHCVQTFAHPGSSSENPEVLPRSITGGKNYPTLHPSASPDIQVDAEPVEPSEITSDA 588

  Fly  1098 NL----------------------------------------GE-------------EMPE---- 1105
            |:                                        ||             |.||    
 Frog   589 NIHPLPVFNSMNRLLETQSTGIGRGVCKISGQTANLESGSCDGEKCSHCKETELRDTEGPESDSD 653

  Fly  1106 --------------VQMTESRWRKMKKDF-DRVNRRMRRAC---RKAVKSQAFYWLIIVLVFLNT 1152
                          .|.||::..|.:... .::.:..:..|   ||.|.|:.|...|::.:.:||
 Frog   654 GCYEFTQDPQGSEQQQQTEAKRAKSRSQIPSKLQQLWKMVCETFRKIVDSKYFGRGIMIAILINT 718

  Fly  1153 GVLATEHYGQLDWLDNFQEYTNVFFIGLFTCEMLLKMYSLGFQGYFVSLFNRFDCFVVIGSITET 1217
            ..:..|::.|.:.|.|..|.:|:.|..||..|||||:...|..||..:.:|.||..:|:.|:.|.
 Frog   719 LSMGIEYHEQPEELTNALEISNIVFTSLFALEMLLKLLVYGPFGYIKNPYNIFDGIIVVISVWEI 783

  Fly  1218 LLTNTGMMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALL 1282
            :....|     |:||||..||:||.|:.::..:|...:..|:.::.::|:..:||.|||.||::|
 Frog   784 IGQQGG-----GLSVLRTFRLMRVLKLVRFMPALQRQLVVLMKTMDNVATFCMLLMLFIFIFSIL 843

  Fly  1283 GMQVFGGKF--NFDGKEEKYRMNFDCFWQALLTVFQIMTGEDWNAVMYVGINAYGGVSSYGALAC 1345
            ||.:||.||  ..||.....|.|||....|.:|||||:|.||||.|:      |.|::|..:.|.
 Frog   844 GMHLFGCKFASEKDGDTLPDRKNFDSLLWATVTVFQILTQEDWNKVL------YNGMASTSSWAA 902

  Fly  1346 IYFIILFICGNYILLNVFLAIAVDNLADADSLSEVEKEEE----------PHD------------ 1388
            :|||.|...|||:|.|:.:||.|:..    ...||.|.|:          |.|            
 Frog   903 LYFIALMTFGNYVLFNLLVAILVEGF----QTEEVSKREDMSAHLSCIQLPVDSIGQGEGSQSGS 963

  Fly  1389 ESAQKKSH--------SPTPTIDGMDDHLSI-----------------------DIDMEQQELDD 1422
            |||.:..|        |.|| :.|..|..|:                       ||.|..:...:
 Frog   964 ESAHEDCHIRKGLSNASFTP-LHGYPDGKSMLQPPLIIHTAATPMPMPKCALFGDIPMAGESRRE 1027

  Fly  1423 ---------------------------------------------------EDKMDHETL----- 1431
                                                               |...:|::|     
 Frog  1028 SNVSGGPHACEIRSMSSSRNSPHSSWGAVCSWNSRRSSWNSIGRASSLKRHEQSGEHKSLLSADG 1092

  Fly  1432 --------SDEEV----------------REMCE------------------------------- 1441
                    |||||                ||..:                               
 Frog  1093 KESSEGDTSDEEVSSRTGSSLNRMDLVGKREAYDMHDTLHVPYSYGMQSRHSLPGEYQDCNGKTS 1157

  Fly  1442 --------EEEEVD-----EEGMITARPRRMSEVNTATKILPIPPGT------SFFLFSQTNRFR 1487
                    ||.:||     ::.:..:|..|:.    |..|..:|...      |.:||...::||
 Frog  1158 PVFPPLHVEESKVDYSNNIDDDVNMSRGERLK----AWIISHLPAWCKERETWSLYLFPPYSKFR 1218

  Fly  1488 VFCHWLCNHSNFGNIILCCIMFSSAMLAAENPLRANDDLNKV-LNKFDYFFTAVFTIELILKLIS 1551
            :.|:.:..|..|.:::|..|..:...:|.|.|........:: |...:|.||.:|..|:.:|:::
 Frog  1219 LMCNKIITHRMFDHVVLVIIFLNCITIAMERPKIDPHSAERIFLTLSNYIFTLIFLAEMTVKVVA 1283

  Fly  1552 YGFVLHDGAFCRSAFNLLDLLVVCVS----LISLVSSSNA--ISVVKILRVLRVLRPLRAINRAK 1610
            ..|.....|:.||::|:||.::|.:|    |:|:||.|..  :.::::||:||.|||||.|:||:
 Frog  1284 MNFCFGGKAYLRSSWNVLDGMLVLISVIDILVSMVSDSGTKILGMLRVLRLLRTLRPLRVISRAQ 1348

  Fly  1611 GLKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQLFKYVVKCVVVAIKTIGNIMLVTYLLQFM 1675
            |||.||:.::.::|.|||||::.|    .|.:|                                
 Frog  1349 GLKLVVETLMSSLKPIGNIVVICC----AFFII-------------------------------- 1377

  Fly  1676 FAVIGVQLFKGKFFKC--TDGSKMT-QDECYGTYLVYDDGDVHKPRLREREWSNNRFHFDDVAKG 1737
            |.::|||||||||:.|  .|...:| :.:|..               .:.:|:.::::||::.:.
 Frog  1378 FGILGVQLFKGKFYYCQGEDTRNITNKSDCLE---------------NKYKWARHKYNFDNLGQA 1427

  Fly  1738 MLTLFTVSTFEGWPGLLYVSIDSNKENGGPIHNFRPIVAAYYIIYIIIIAFFMVNIFVGFVIVTF 1802
            :::||.:::.:||..::|..:|:...:..|:.|:.|.:..|:|.:::|:|||::|:|||.|:..|
 Frog  1428 LMSLFVLASKDGWVDIMYDGLDAVGVDQQPVMNYNPWMLLYFISFLLIVAFFVLNMFVGVVVENF 1492

  Fly  1803 ----QNEGEQEYKNCD------LDKNQRN-------------CIEFALKAKPVRRYIPKHGIQYK 1844
                |::.|:|.|..:      ::|.:|:             .:|.:  |.||:.      .|.|
 Frog  1493 HKCRQHQEEEEAKRREEKRLRRMEKKRRSKERELADLMLDDVILEHS--ASPVKE------AQCK 1549

  Fly  1845 VWW------------FVTSSSFEYTIFILIMINTVTLAMKFYNQPLWYTELLDALNMIFTAVFAL 1897
            .::            ..||...:..|..:|.:|.:|:||:.|.||....|.|...|.|||.:|.|
 Frog  1550 PYYSEYSHPRLLIHQMCTSHYLDLFITGVIGLNVITMAMEHYQQPKVLDEALKICNYIFTLIFVL 1614

  Fly  1898 EFVFKLAAFRFKNYFGDAWNVFDFIIVLGSFIDIVYSEIKSKDTSQIAECDIVEGCKSTKKSAGS 1962
            |...|:.||.|:.:|.|.||..|..|||.|.:.|...||:                  ...|...
 Frog  1615 ESGCKMVAFGFRRFFKDRWNQLDLAIVLLSIMGITLEEIE------------------VNASLPI 1661

  Fly  1963 NLISINFFRLFRVMRLVKLLSKGEGIRTLLWTFIKSFQALPYV---ALLIVLLFFIYAVVGMQVF 2024
            |...|...|:.|:.|::|||....|:|.||.|.:   ||||.|   .||.:|||||:|.:|:::|
 Frog  1662 NPTIIRIMRVLRIARVLKLLKMAVGMRALLDTVL---QALPQVGNLGLLFMLLFFIFAALGVELF 1723

  Fly  2025 GKIALDGGN---AITANNNFQTFQQAVLVLFRSATGEAWQEIMMSCSAQPDVKCDMNSDTPGEPC 2086
            |.:.....:   .:..:..|:.|..|.|.|||.:||:.|..||      .|...|.|.|:   .|
 Frog  1724 GDLECTDSHPCEGLGRHATFRNFGMAFLTLFRVSTGDNWNGIM------KDTLRDCNEDS---TC 1779

  Fly  2087 GSSIAYP-YFISFYVLCSFLIINLFVAVIMDNFD 2119
            .:::..| ||:||.:...|:::|:.:||:|.:.:
 Frog  1780 YNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLE 1813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ca-alpha1DNP_723952.2 Ion_trans 767..1042 CDD:395416 100/330 (30%)
Ion_trans 1137..1379 CDD:395416 90/243 (37%)
Ion_trans 1496..1809 CDD:395416 94/326 (29%)
Ion_trans 1851..2126 CDD:395416 92/276 (33%)
GPHH 2135..2188 CDD:407139
Ca_chan_IQ 2199..2271 CDD:400901
cacna1gXP_031750725.1 Ion_trans 52..375 CDD:395416 100/332 (30%)
Ion_trans 703..932 CDD:395416 90/243 (37%)
Ion_trans 1227..1499 CDD:395416 93/322 (29%)
Ion_trans 1568..1809 CDD:395416 91/270 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D172471at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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