Sequence 1: | NP_723952.2 | Gene: | Ca-alpha1D / 34950 | FlyBaseID: | FBgn0001991 | Length: | 2705 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012826714.1 | Gene: | scn3a / 100125099 | XenbaseID: | XB-GENE-5812330 | Length: | 2019 | Species: | Xenopus tropicalis |
Alignment Length: | 2037 | Identity: | 490/2037 - (24%) |
---|---|---|---|
Similarity: | 833/2037 - (40%) | Gaps: | 583/2037 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 747 ALFCLSVKNPLRALCIRIVEWKPFEFLILLTIFANCIALAVYTPYPGSDSNVTNQTLEKVEYVFL 811
Fly 812 VIFTAECVMKILAYGFVLHNGAYLRNGWNLLDFTIVVIGAISTALSQLMKDAFDVKALRAFRVLR 876
Fly 877 PLRLVSGVPSLQVVLNSILKAMVPLFHIALLVLFVIIIYAIIGLELFSGKLHKACRDEITGEYEE 941
Fly 942 NIRP----------------------------------------CG----VGYQCPPGYKCYGGW 962
Fly 963 DGPNDGITNFDNFGLAMLTVFQCVTLEGWTDVLYSIQDAMGSDWQWMYFISMVILGAFFVMNLIL 1027
Fly 1028 GVL-------------------------------------------------------------- 1030
Fly 1031 --SGEFSKERNK-AKNRGDFQKLREKQQIEED--------------------------------- 1059
Fly 1060 -------------LRGYL-----------------------------DWITQAEDIEPDAVGGLI 1082
Fly 1083 SDGKGKQPN--------------------EMDSTEN-----------------LGEEMPEVQM-- 1108
Fly 1109 ---------TESRWRK-------MKKDF--DRVNRR------------------MRRAC----RK 1133
Fly 1134 AVKSQAFY-----WL------------------IIVLVFLNTGVLATEHYGQLDWLDNFQEYTNV 1175
Fly 1176 FFIGLFTCEMLLKMYSLGFQGYFVSLFNRFDCFVVIGSITETLLTNTGMMPPLGVSVLRCVRLLR 1240
Fly 1241 VFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNFDGKE-------- 1297
Fly 1298 --EKYRMNFDCFWQALLTVFQIMTGEDWNAVMYVGINAYGGVSSYGALACIYFIILFICGNYILL 1360
Fly 1361 NVFLAIAV-----DNLADADSLSEVE-----------------------------------KEEE 1385
Fly 1386 PHDESAQKK----SHSPTPTIDGMDDHL----------SIDIDMEQQELDDEDKM---------- 1426
Fly 1427 ---------DHETLSDEEVREMCEEEEEVDEEGMITARPRRMSEVNTATKILPIP---------P 1473
Fly 1474 GTSFF-----------------LFSQTNRFRVFCHWLCNHSNFGNIILCCIMFSSAMLAAEN-PL 1520
Fly 1521 RANDDLNKVLNKFDYFFTAVFTIELILKLISYGFVLH-DGAFCRSAFNLLDLLVVCVSLISLVSS 1584
Fly 1585 S---NAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQ 1646
Fly 1647 LFKYVVKCVVVAIKTIGNIMLVTYLLQFMFAVIGVQLFKGKFFKCTDGSKMTQDECYGTYLVYDD 1711
Fly 1712 GDVHKPRLRERE---WSNNRFHFDDVAKGMLTLFTVSTFEGWPGLLYVSIDSNKENGGPIHNFRP 1773
Fly 1774 IVAAYYIIYIIIIAFFMVNIFVGFVIVTFQNE----GEQEYKNCDLDKNQRNCIEFALK------ 1828
Fly 1829 -AKPVRRYIPKHGIQYKVWWFVTSSSFEYTIFILIMINTVTLAMKFYNQPLWYTELLDALNMIFT 1892
Fly 1893 AVFALEFVFKLAAFRFKNYFGDAWNVFDFIIVLGSFIDIVYSEIKSKDTSQIAECDIVEGCKSTK 1957
Fly 1958 KSAGSNLISINFFRLFRVMRLVKLLSKGEGIRTLLWTFIKSFQALPYVALLIVLLFFIYAVVGMQ 2022
Fly 2023 VFGKIALDGGNAITANNNFQTFQQAVLVLFRSATGEAWQEIMMSC--SAQPDVKCDMNSDTPGE- 2084
Fly 2085 ---PCGS-SIAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTRDWS-ILGPHHLDEFIRLWSEYD 2144
Fly 2145 PDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRMACKRLVSMNMPLNSDGTVLFNATLFAVVRTSL 2209
Fly 2210 SIKTDGNIDDANSELRATIKQIWKRTNPKLLDQVVPPPGNDDEVT-----VGKFYATYLIQDYFR 2269
Fly 2270 RFKKRK----------EQEGKEG------------HPDSNTVTLQAGLRTLHEVSPALKRAIS-- 2310
Fly 2311 ----GNLDELDQEPEPMHRRHH 2328 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Ca-alpha1D | NP_723952.2 | Ion_trans | 767..1042 | CDD:395416 | 98/383 (26%) |
Ion_trans | 1137..1379 | CDD:395416 | 84/279 (30%) | ||
Ion_trans | 1496..1809 | CDD:395416 | 93/324 (29%) | ||
Ion_trans | 1851..2126 | CDD:395416 | 83/281 (30%) | ||
GPHH | 2135..2188 | CDD:407139 | 12/52 (23%) | ||
Ca_chan_IQ | 2199..2271 | CDD:400901 | 15/76 (20%) | ||
scn3a | XP_012826714.1 | Ion_trans | 151..430 | CDD:278921 | 86/295 (29%) |
Na_trans_cytopl | 512..627 | CDD:288761 | 11/114 (10%) | ||
Ion_trans | 786..982 | CDD:278921 | 67/210 (32%) | ||
Na_trans_assoc | 1008..1216 | CDD:284034 | 28/207 (14%) | ||
Ion_trans | 1239..1496 | CDD:278921 | 86/301 (29%) | ||
Na_channel_gate | 1488..1540 | CDD:240441 | 14/57 (25%) | ||
Ion_trans | 1562..1800 | CDD:278921 | 75/262 (29%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |