DRSC/TRiP Functional Genomics Resources

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Protein Alignment BicC and hdlbp

DIOPT Version :9

Sequence 1:NP_476865.1 Gene:BicC / 34946 FlyBaseID:FBgn0000182 Length:905 Species:Drosophila melanogaster
Sequence 2:NP_001006854.1 Gene:hdlbp / 448610 XenbaseID:XB-GENE-942331 Length:1283 Species:Xenopus tropicalis


Alignment Length:600 Identity:123/600 - (20%)
Similarity:223/600 - (37%) Gaps:199/600 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SFNKLMYPSAADVAKPP------MVGLEVEAGSIG-SLSSLHALPSTTSVGS-GAPS-------- 54
            :..:::..:...|..||      .|.|..|...:| :|:.::|..::.:|.| .|||        
 Frog   318 NLQEILERTGVSVEIPPSDSSSETVILRGEPEKLGQALTEVYAKANSFTVASVSAPSWLHRFIIG 382

  Fly    55 -------ETQSEISSVDSDWSDIRAIAMKLGVQNPDDLHTERFKVDRQKLEQLIK--------AE 104
                   :...:|..|..::::...   |:.::.|    ||...|.:|::|.|.:        ||
 Frog   383 KKGQNLAKITQQIPKVHIEFTEGED---KISLEGP----TEDVTVAQQQMEALFRDLISRMDFAE 440

  Fly   105 SSIE--------GMNGAEYFFHDIMNTTDTY-VSWPCRLKIGAKSKKDPHVRIVGKVDQVQRAKE 160
            .:|:        |.:||:     |....:.| ||    ::|...|:|..|:||.|....||:||:
 Frog   441 INIDHRFHRHLIGKSGAK-----INKIKEQYKVS----VRIPQDSEKSNHIRIEGDPQGVQQAKK 496

  Fly   161 RIL---SSLDSRGTRVIMKMDVSYTDHSYIIGRGGNNIKRIMDD-THTHIHFPDSNRSNPTEKSN 221
            .:|   |.:::..|:.::   :....|..|||:.|..|:.|.:. ....|:|||     |.:||:
 Frog   497 ELLELASRMENERTKDLI---IEQKFHRTIIGQKGERIREIREKFPEVIINFPD-----PAQKSD 553

  Fly   222 QVSLCGSLEGVERARALVR------------LSTPLLISFEMPVMGPNKPQPDHETPYIKMIETK 274
            .|.|.|....||:....::            :|.|:...|...::|.....       ||.|..:
 Frog   554 IVQLRGPKNEVEKCTKYLQKMVSELVENSYSISVPIFKQFHKNIIGKGGAN-------IKKIREE 611

  Fly   275 FNVQ-------------VIFSTRP----------------------------KLHTSLVLVK--- 295
            .|.:             ||...||                            |||.||:..|   
 Frog   612 CNTKIDLPAENSNSEMIVITGKRPNCEAARDRILAIQKELANITELEVNIPSKLHNSLIGAKGRF 676

  Fly   296 ------------------GSEKESAQVRDATQLLINFACESIASQIL----------VNVQMEIS 332
                              ||..::..:|...|     ..|....|:|          ...:::..
 Frog   677 IRSIMEECGGVHIHFPSEGSGSDTVTIRGPVQ-----DVERAKKQLLQLAEEKQTKSFTSELKAK 736

  Fly   333 PQHHEIVKGKNNVNLLSIMERTQTKIIFPDLSDMNVKPLKKSQVTISGRIDDVYLARQQLLGNLP 397
            |::|:.:.||...|:..:.::|..:||||...|.:     :..:||.|..|.|..|:::      
 Frog   737 PEYHKFLIGKGGGNIRKVRDQTGARIIFPTADDKD-----QQLITIVGTEDSVKEAQKE------ 790

  Fly   398 VALIFDFPDNHNDASEIMSLNTKYGVYITLRQKQRQSTLA-------------------IVVKGV 443
              |.|......|...:.||::.|:..:..:|:.|....:|                   :.:||.
 Frog   791 --LEFLIKSLDNIVEDSMSVDPKHHRHFVIRRGQVLRDIAEEYGGVIVSFPRSGVQSDRVTLKGA 853

  Fly   444 EKFIDKIYEARQEIL 458
            ::.::   .|:::||
 Frog   854 KECVE---AAKKKIL 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BicCNP_476865.1 vigilin_like_KH 174..240 CDD:239087 19/66 (29%)
vigilin_like_KH 327..393 CDD:239087 17/65 (26%)
SAM_BICC1 805..868 CDD:188919
SAM 807..867 CDD:197735
hdlbpNP_001006854.1 vigilin_like_KH 153..214 CDD:239087
vigilin_like_KH 225..286 CDD:239087
vigilin_like_KH 298..358 CDD:239087 8/39 (21%)
vigilin_like_KH 369..426 CDD:239087 12/63 (19%)
vigilin_like_KH 440..499 CDD:239087 20/67 (30%)
vigilin_like_KH 510..572 CDD:239087 20/69 (29%)
vigilin_like_KH 584..645 CDD:239087 12/67 (18%)
vigilin_like_KH 656..718 CDD:239087 12/66 (18%)
vigilin_like_KH 730..792 CDD:239087 17/74 (23%)
vigilin_like_KH 803..865 CDD:239087 9/64 (14%)
vigilin_like_KH 876..968 CDD:239087
vigilin_like_KH 974..1035 CDD:239087
vigilin_like_KH 1057..1116 CDD:239087
vigilin_like_KH 1127..1189 CDD:239087
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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