DRSC/TRiP Functional Genomics Resources

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Protein Alignment BicC and vgl1

DIOPT Version :9

Sequence 1:NP_476865.1 Gene:BicC / 34946 FlyBaseID:FBgn0000182 Length:905 Species:Drosophila melanogaster
Sequence 2:NP_588106.2 Gene:vgl1 / 2539425 PomBaseID:SPCC550.14 Length:1291 Species:Schizosaccharomyces pombe


Alignment Length:560 Identity:123/560 - (21%)
Similarity:201/560 - (35%) Gaps:131/560 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 STTSV-GSGA------PSETQSEISSVDSDWSDIRAIAMKLGVQNPDDLHTER--FKVDRQKLEQ 99
            |.||| ||.:      |....|..||..|..|.::          ..|..||.  ...|.|....
pombe   122 SNTSVAGSDSVSRDKIPFSASSRASSTKSTLSSVK----------ETDFVTETLILSPDNQAPRM 176

  Fly   100 LIKAESSIEGMNGAEYFFHDIMNTTDTYVSWPCRLKIGAKSK-KDPHVRIVGKVDQVQRAKERIL 163
                 |.:...|........:|:.|.|      |:.:...|| |:....|.||...|:.|:.:||
pombe   177 -----SFVGKPNSVAEIVRTVMHQTST------RINVSTASKTKNTTFLIQGKTSAVKAARRQIL 230

  Fly   164 SSLDSRGTRVIMKMDVSYTDHSYIIGRGGNNIKRIMDDTHTHIHFPDSNRS---------NPTEK 219
            ..:..|.|:. |...|...  ..|||..|.|:|.|||.|.|.|..|..|.:         .|.::
pombe   231 KLIGRRETKT-MPCPVFVV--GAIIGTNGQNLKSIMDRTSTRIQIPKRNNTANESSDDAKKPEKE 292

  Fly   220 SNQ----------------VSLCGSLEGVERAR-------------ALVRLSTPLLISFEM--PV 253
            .|.                :::.|..||||.|:             ..||:|.   ||.|:  .:
pombe   293 ENSAASTLDDLEPQYEMTTITIEGDFEGVELAQKDIEAIINERTSNTTVRISH---ISTELYSLL 354

  Fly   254 MGPNKPQPDHETPYIKMIE--TKFNVQVIFS-TRPKLHTSLVLVKGSEKESAQVRDATQLLINFA 315
            .||:...       ||.:|  ....||:.|: ..|....:.:::.|   |.:.||:....|...|
pombe   355 RGPDGKN-------IKELEEGRDLKVQIPFAYLDPSAPVNPIVLSG---EKSAVRECALYLQGQA 409

  Fly   316 CESIASQILVNVQMEISPQHHEIVKGKNNVNLLSIMERTQTKIIFPDLS-DMNVKPLKKSQVTIS 379
            .|.:.:.|  ...:.|..:.|..:.|:..|.:..|:.::...:|.|.:: |.:|..::...:.||
pombe   410 EELLRTTI--PTMLPIPRRQHRFINGEKGVGIQDILRKSGCSVILPPINGDSDVVSVRGPALNIS 472

  Fly   380 GRID-DVYLARQQLLGNLPVALIFDFPDNHNDASEIMS-----------LNTKYGVYITLRQK-- 430
            ..|. .:..|...::..:.:...:....|..|.:.|::           |..:..|...|.::  
pombe   473 EGIRLTLERANSTIVDAVNITTAYASSKNPFDIASIVARLFLRSRKLIPLEEECAVQYHLPKREE 537

  Fly   431 -QRQSTLAIVVKGVEKFIDKIYEARQEILRLATPF---------VKPEIPDYYFMPKDKDLNLAY 485
             |..|...::::...|..:.:.|.|.::|.|...|         :.|.:..|....|.|:|....
pombe   538 LQSNSNKTVIIEISGKSQEAVREGRAKLLALVNQFPESKFYKVTIDPLLQRYVIGSKGKNLQKLR 602

  Fly   486 RTQLTALLAG------------YV--DSPKTPSLLPPSLA 511
            ......||.|            |:  |..|:|..:...||
pombe   603 NEHQVELLVGEYGEEDPDVIVCYIGADDGKSPDQIQKELA 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BicCNP_476865.1 vigilin_like_KH 174..240 CDD:239087 24/103 (23%)
vigilin_like_KH 327..393 CDD:239087 13/67 (19%)
SAM_BICC1 805..868 CDD:188919
SAM 807..867 CDD:197735
vgl1NP_588106.2 KH-I 238..329 CDD:238053 25/93 (27%)
KH-I 345..406 CDD:294072 16/73 (22%)
vigilin_like_KH 421..473 CDD:239087 10/51 (20%)
vigilin_like_KH 578..>623 CDD:239087 8/44 (18%)
vigilin_like_KH 660..727 CDD:239087
KH 741..802 CDD:197652
vigilin_like_KH 810..884 CDD:239087
KH_1 896..957 CDD:278442
vigilin_like_KH 969..1041 CDD:239087
KH-I 1052..1115 CDD:238053
vigilin_like_KH 1223..1280 CDD:239087
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2208
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.860

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