DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10839 and Lrriq3

DIOPT Version :9

Sequence 1:NP_001246039.1 Gene:CG10839 / 34944 FlyBaseID:FBgn0028858 Length:182 Species:Drosophila melanogaster
Sequence 2:NP_001019478.1 Gene:Lrriq3 / 499732 RGDID:1591943 Length:633 Species:Rattus norvegicus


Alignment Length:75 Identity:22/75 - (29%)
Similarity:34/75 - (45%) Gaps:13/75 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 LNSLTECQKLSL---SSNMIEKITGISGMKNLKVLSLARNNLKTL------NGIEPLADTLEELW 99
            :.:|..|..|.:   |:|.:..|..:.|.|.|..|.|..|.:|||      ||::    .|:.|:
  Rat    43 MENLQSCISLRVCIFSNNFVTDIQPLQGCKKLIKLDLHGNQIKTLPDRTFWNGLK----NLKLLY 103

  Fly   100 VSYNNIEKTK 109
            :..|...|.|
  Rat   104 LHDNGFAKLK 113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10839NP_001246039.1 LRR_RI <37..129 CDD:238064 22/75 (29%)
LRR_4 48..90 CDD:289563 16/50 (32%)
leucine-rich repeat 50..71 CDD:275380 6/23 (26%)
LRR_8 51..105 CDD:290566 18/62 (29%)
leucine-rich repeat 72..94 CDD:275380 9/27 (33%)
leucine-rich repeat 95..116 CDD:275380 5/15 (33%)
leucine-rich repeat 117..141 CDD:275380
leucine-rich repeat 142..171 CDD:275380
Lrriq3NP_001019478.1 PPP1R42 36..>128 CDD:411060 22/75 (29%)
LRR 1 51..72 5/20 (25%)
leucine-rich repeat 52..73 CDD:275378 5/20 (25%)
LRR 2 73..94 7/20 (35%)
leucine-rich repeat 74..98 CDD:275378 9/27 (33%)
LRR 3 98..119 5/16 (31%)
leucine-rich repeat 99..115 CDD:275378 5/15 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 322..343
DUF5401 <388..>586 CDD:375164
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0531
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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