DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10839 and Lrrc61

DIOPT Version :9

Sequence 1:NP_001246039.1 Gene:CG10839 / 34944 FlyBaseID:FBgn0028858 Length:182 Species:Drosophila melanogaster
Sequence 2:NP_001103630.1 Gene:Lrrc61 / 243371 MGIID:2652848 Length:259 Species:Mus musculus


Alignment Length:142 Identity:38/142 - (26%)
Similarity:65/142 - (45%) Gaps:27/142 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 LNSLTEC---QKLSLSSNMIEKITGISGMKNLKVLSLARNNLKTLNGIEPLA--DTLEELWVSYN 103
            |..|.||   :.|.||.|.:..:..::.::.|.||:::.|.   |.|:||||  :.|:.|..:.|
Mouse    46 LGCLGECLNLEWLDLSGNALTHLGPLASLRQLAVLNVSNNR---LTGLEPLAACENLQSLNAAGN 107

  Fly   104 NIEKTKPLESMKALRVFYISFNMIKDWTEFMRMGVPPNLSEITFVGNPLNENMDQSAFTAEAVRR 168
            .:.....|:.:..|:..           |.:|:..|     :..:.|||..|   :::.|.....
Mouse   108 LLTTPGQLQCLAGLQAL-----------EHLRLRDP-----LARLSN
PLCAN---ASYWAVVQEL 153

  Fly   169 LPNMKKLDGEPV 180
            ||.:|.:|||.|
Mouse   154 LPGLKVIDGERV 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10839NP_001246039.1 LRR_RI <37..129 CDD:238064 23/89 (26%)
LRR_4 48..90 CDD:289563 12/44 (27%)
leucine-rich repeat 50..71 CDD:275380 5/23 (22%)
LRR_8 51..105 CDD:290566 17/55 (31%)
leucine-rich repeat 72..94 CDD:275380 10/23 (43%)
leucine-rich repeat 95..116 CDD:275380 4/20 (20%)
leucine-rich repeat 117..141 CDD:275380 4/23 (17%)
leucine-rich repeat 142..171 CDD:275380 6/28 (21%)
Lrrc61NP_001103630.1 internalin_A <43..>138 CDD:380193 26/110 (24%)
LRR 1 54..75 4/20 (20%)
leucine-rich repeat 55..76 CDD:275380 4/20 (20%)
LRR 2 76..97 10/23 (43%)
leucine-rich repeat 77..98 CDD:275380 10/23 (43%)
LRR 3 98..119 4/20 (20%)
leucine-rich repeat 99..123 CDD:275380 5/23 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0531
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15454
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

Return to query results.
Submit another query.