DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10839 and K10D2.8

DIOPT Version :10

Sequence 1:NP_609776.1 Gene:CG10839 / 34944 FlyBaseID:FBgn0028858 Length:182 Species:Drosophila melanogaster
Sequence 2:NP_001254924.1 Gene:K10D2.8 / 13189483 WormBaseID:WBGene00189952 Length:335 Species:Caenorhabditis elegans


Alignment Length:178 Identity:50/178 - (28%)
Similarity:82/178 - (46%) Gaps:36/178 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 LQFQYPPIEKMDPILNSLTECQKLSLSSNMIEKITGISGMKNLKVLSLARNNLKTLNGIEPLA-- 92
            |:|....|:||:. |:.|...::|.|.:|.|.||.|:.||..||.|||..|.|:.:.|::.|:  
 Worm   142 LEFGDNRIQKMEN-LSHLVNLERLFLGANQIRKIEGLDGMAQLKELSLPGNALQIIEGLDTLSGL 205

  Fly    93 -------------------DTLEELWVSYNNIEKTKPLESMKALRVFYISFNMIKDWTEFMRMGV 138
                               ..|:.|.::.|.|||.:.:|..|.:....|..|.:..|.:..::..
 Worm   206 KSISLAQNGIRKIDGLSGLTNLKSLDLNDNIIEKLENVEQFKGISSLMIRKNKLNCWQDVRQLKK 270

  Fly   139 PPNLSEITFVGNPLNENMDQSAFTAEAVRR------LPNMKKLDGEPV 180
            ..||:.:|...|||        ::::...|      ||::|.|||.|:
 Worm   271 LENLTVLTMEMNPL--------YSSDYTYRNRVKEILPDVKLLDGFPI 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10839NP_609776.1 PPP1R42 <37..152 CDD:455733 38/135 (28%)
leucine-rich repeat 50..71 CDD:275380 9/20 (45%)
leucine-rich repeat 72..94 CDD:275380 9/42 (21%)
leucine-rich repeat 95..116 CDD:275380 7/20 (35%)
leucine-rich repeat 117..141 CDD:275380 3/23 (13%)
leucine-rich repeat 142..171 CDD:275380 7/34 (21%)
K10D2.8NP_001254924.1 leucine-rich repeat 30..50 CDD:275380
leucine-rich repeat 51..72 CDD:275380
PPP1R42 70..310 CDD:455733 49/176 (28%)
leucine-rich repeat 73..94 CDD:275380
leucine-rich repeat 95..116 CDD:275380
leucine-rich repeat 117..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380 7/18 (39%)
leucine-rich repeat 161..182 CDD:275380 9/20 (45%)
leucine-rich repeat 183..204 CDD:275380 9/20 (45%)
leucine-rich repeat 205..226 CDD:275380 0/20 (0%)
leucine-rich repeat 252..273 CDD:275380 3/20 (15%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.