DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ku80 and CG11550

DIOPT Version :9

Sequence 1:NP_609767.2 Gene:Ku80 / 34930 FlyBaseID:FBgn0041627 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_651882.1 Gene:CG11550 / 43731 FlyBaseID:FBgn0039864 Length:298 Species:Drosophila melanogaster


Alignment Length:279 Identity:52/279 - (18%)
Similarity:94/279 - (33%) Gaps:101/279 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 QAALELQNVATTLRVARRRILLLFDF-NDFPQDYEKFNEITDELLGENIELIVGTHNIAY----- 162
            :|.||.| .|:...:.|..:|...|: :..|...::|:|      ||.:...   |...|     
  Fly     3 EANLEDQ-YASFPEIRRPEVLKFLDWIHAQPHISDRFSE------GEALHFF---HACRYSMEVA 57

  Fly   163 ---IDNAITSQPQ-AIFNFSRKCGPDELNNQKYALSLVPRCNATLCSFK------EALHT----- 212
               :|..:|::.. ..|..:..|...|:......:|:||...||...::      :.|:|     
  Fly    58 KQVLDTNLTARTHLEEFFVNLDCERPEIRRAMRTVSIVPLPGATPEGYRVILAKLDDLNTSNYNF 122

  Fly   213 ---------VFKVTNRRPWVWNAKLNIGSKISISLQ----------GIIAMK-------NQTPVK 251
                     ||..     |::...:..|..|.|.|:          |::.||       ....::
  Fly   123 ADVMKLYCMVFDF-----WMYEDGIQPGHVIVIDLKNTSLGHVARIGLLQMKKFLYYLQEAAAIR 182

  Fly   252 LVKVWAEKDEIVIRETRHYIKGTEITPLPENLITGYMLGGTPVPYDEAVLEP--KEPHPPGLH-- 312
            |:..             |:|   .|.|..:.::              |::.|  |:.....||  
  Fly   183 LIGF-------------HFI---NIVPFMDKIL--------------ALMTPFMKKELTTVLHMH 217

  Fly   313 -----FFGFIKRNAVPDEY 326
                 |:.|:.:..:|.||
  Fly   218 SDLKEFYKFVPQEMLPKEY 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ku80NP_609767.2 Ku_N 7..213 CDD:281693 27/138 (20%)
KU80 221..524 CDD:238445 23/132 (17%)
Ku_PK_bind 562..663 CDD:285938
CG11550NP_651882.1 CRAL_TRIO 94..239 CDD:279044 31/178 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1471
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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