DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ku80 and CG5958

DIOPT Version :9

Sequence 1:NP_609767.2 Gene:Ku80 / 34930 FlyBaseID:FBgn0041627 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_609119.2 Gene:CG5958 / 34022 FlyBaseID:FBgn0031913 Length:294 Species:Drosophila melanogaster


Alignment Length:54 Identity:17/54 - (31%)
Similarity:27/54 - (50%) Gaps:9/54 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VRTCAAEEVKLKSAK-CVAEILKDKIVCDRKDYVSFVLVGC----DTDEIKTED 62
            ||....|:||.|..| .|..:||:   ||:|.. ..::|.|    |..:|.:::
  Fly    95 VRGLLVEQVKEKFVKGSVINVLKN---CDQKGR-RVLIVNCGKLWDPSDITSDE 144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ku80NP_609767.2 Ku_N 7..213 CDD:281693 17/54 (31%)
KU80 221..524 CDD:238445
Ku_PK_bind 562..663 CDD:285938
CG5958NP_609119.2 CRAL_TRIO_N 38..82 CDD:215024
CRAL_TRIO 111..261 CDD:279044 10/38 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1471
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.