DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ku80 and ttpa

DIOPT Version :9

Sequence 1:NP_609767.2 Gene:Ku80 / 34930 FlyBaseID:FBgn0041627 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_956025.2 Gene:ttpa / 325906 ZFINID:ZDB-GENE-030131-4631 Length:285 Species:Danio rerio


Alignment Length:115 Identity:30/115 - (26%)
Similarity:46/115 - (40%) Gaps:37/115 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 EW---LNGLQAALELQN--VATTLRVARRRILLLFDFNDFPQDYEKFNEITDELLGENIELIV-G 156
            ||   .|||:|..:||:  .|..|::.             |...:|.:.:    |.::..|.| |
Zfish   143 EWETQRNGLKAIFDLQDWCFAHALQIN-------------PSLAKKISSV----LTDSFPLKVRG 190

  Fly   157 THNIAYIDNAITSQPQAIFNFSRKCGPDELNNQ------KYALSLVPRCN 200
            .|   .|:..|..:|  :|...|...||::..:      .||.||   ||
Zfish   191 IH---LINEPIFFRP--VFAMIRPFLPDKIKQRIHMHGCSYARSL---CN 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ku80NP_609767.2 Ku_N 7..213 CDD:281693 30/115 (26%)
KU80 221..524 CDD:238445
Ku_PK_bind 562..663 CDD:285938
ttpaNP_956025.2 CRAL_TRIO_N 26..70 CDD:215024
CRAL_TRIO 97..246 CDD:279044 30/115 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.