DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ku80 and pku80

DIOPT Version :9

Sequence 1:NP_609767.2 Gene:Ku80 / 34930 FlyBaseID:FBgn0041627 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_596791.1 Gene:pku80 / 2541045 PomBaseID:SPBC543.03c Length:695 Species:Schizosaccharomyces pombe


Alignment Length:774 Identity:156/774 - (20%)
Similarity:283/774 - (36%) Gaps:220/774 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SNKECLIIVL----DVRTC--AAEEVKLK-SAKCVAEILKDKIVCDRK-DYVSFVLVGCDTDEIK 59
            |:|||.:.||    |:.||  ......|: :.....:.|..|.:.:|| |.|..|...||..:  
pombe     2 SDKECTVFVLDLGKDMGTCHHGRSHSDLEWTLSYFHDELSHKFLANRKTDVVGIVGYKCDDTK-- 64

  Fly    60 TEDASHPNVLPFGEPRLCSWQLLLEFFQFVNKTACEDGEW----LNGLQAAL--ELQNVATTLRV 118
                                          |..|.::..|    |..:|.||  :||:|:.||:.
pombe    65 ------------------------------NDLAEQEAYWNISVLYPIQTALFSKLQSVSQTLKP 99

  Fly   119 AR-------RRILLLFDF-------NDFPQ------------DYEKFNEITDELLGENIELIVGT 157
            :.       ..|::.||.       |.:.:            |:..:..|.::||..::  .:|.
pombe   100 SNTMQGDLISAIVVSFDLMARHCKKNKWKKKMIVLTAARGIIDFSDYIGIAEQLLQHDV--FLGV 162

  Fly   158 HNIAYIDNAIT-SQPQAIFNFSRKCGPDELNNQKYALSLVPRCNATLCSFKEALHTVFKVTNRRP 221
            :.:.:....|. |:|   ...|:| ..:|:..|::    |..|:...|:|::..:.:.|     |
pombe   163 YGVDFDQEDINYSEP---LKESQK-KENEVRIQEF----VESCHGQYCTFQQIYNNIGK-----P 214

  Fly   222 WV--------WNAKLNIGSK----ISISLQGIIAMKNQTPVKLVK-----VWAEKD--------- 260
            ||        :....:||::    .|||:|    ::.....:|.|     .:.|.|         
pombe   215 WVRKVRPVAIFRGTFSIGNRDSKDTSISIQ----VERYPRTRLTKPPTSSAFYENDMSKNYECLN 275

  Fly   261 ------------EIVIRETRHYI-----KGTEITPLPENLITGYMLGGTPVPY---DEAVLEPKE 305
                        ...:...|.|:     .........|:|.:||..|.|.||.   ||.||....
pombe   276 IENSNVENKSMESDAVSTVRSYMVRDPKTNDSFEVKREDLESGYSYGRTIVPISRSDEDVLALDT 340

  Fly   306 PHPPGLHFFGFIKRNAVPDEYFCGESLYLLVHQKHNQSAAVKLDALVRALVSSDRAILCWKIYST 370
              .||....|||.::::|..|...::  .::..|.:..:.:...|.|::|....|..|. :..|.
pombe   341 --IPGYEILGFIPKSSLPIYYTISDT--NIIVPKDDFESKLNFSAFVQSLEREHRYALA-RFVSK 400

  Fly   371 KFNRPQMVVLLPRLADDTHPATLYMLEVSY-----TSQHHFWDFPALRTTKTECSEEQLNAID-- 428
            ....|.::||:|.:....|    |::::..     ...:.|.:|..|      .:||.:..||  
pombe   401 DKGVPVLLVLMPYVEFKRH----YLVDIQLPFAEDVRPYSFSEFEKL------SNEEDMRQIDFA 455

  Fly   429 --QLIDSTDL---ECTLRDTQQPRPWAQNDLLPFDALPSIFEQNVMDILERKVIYDNDKEDKMLK 488
              ..||:.||   :|......:|    :|   .|..:|...:|.:.       .|.|..|..:.:
pombe   456 VSNYIDNMDLDSSDCGFNPPFEP----EN---TFSMIPHRLQQAIS-------YYANSPEGDLPQ 506

  Fly   489 DKNFADVFWRVPDPLEEKSKRAAAIVKKLF----PLRYSRAWQEKL------LAKEQAEN--GVA 541
            ...:...:...|..|.:.......::|:..    |::...:.||..      :::||.|.  ...
pombe   507 PNIYLTRYTNPPKSLLDNCILDLKLIKEKLTVNVPVKPKYSSQETAFDTGAPISEEQIEELLNSG 571

  Fly   542 VKSEPAEKEIPLPSDGVGLIDPISDFRRVLASVHTISNA-TERDARFQALAADTRVVIITLLQRR 605
            :..:..||.:.|   .|...||:..|..||.:...:.:| ||.:.           ||..|:.:.
pombe   572 LDEQEGEKLLVL---HVSEKDPVGTFTEVLKNPFGLEDALTEMEK-----------VIKNLIDKS 622

  Fly   606 KQNIGQLGELITLYRQSCID-----FNTFLEYDKFAEELKKIALAKNRSEFWQDVMVDK 659
            |.::. |..|.:|...|.::     ||.:|      ..|||..:..|:.:  ::.:::|
pombe   623 KYDLA-LQSLQSLRLHSILEDEVERFNEYL------TRLKKDVMQNNKPK--ENELINK 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ku80NP_609767.2 Ku_N 7..213 CDD:281693 48/246 (20%)
KU80 221..524 CDD:238445 71/364 (20%)
Ku_PK_bind 562..663 CDD:285938 24/104 (23%)
pku80NP_596791.1 vWA_ku 4..218 CDD:238735 54/260 (21%)
KU80 222..535 CDD:238445 67/345 (19%)
Ku_PK_bind 589..685 CDD:285938 24/104 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53888
OrthoFinder 1 1.000 - - FOG0003754
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102536
Panther 1 1.100 - - LDO PTHR12604
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R647
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.910

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