DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ku80 and C34C12.6

DIOPT Version :9

Sequence 1:NP_609767.2 Gene:Ku80 / 34930 FlyBaseID:FBgn0041627 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_497717.2 Gene:C34C12.6 / 175452 WormBaseID:WBGene00007925 Length:400 Species:Caenorhabditis elegans


Alignment Length:327 Identity:61/327 - (18%)
Similarity:102/327 - (31%) Gaps:118/327 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   313 FFGFIKRNAVPDEYFCGE-SLYLLVHQKHNQSAAVKLDALVRALVSSDRAILCW----------- 365
            |..||..:.:.|..:..| :.:|.|.:..:|.     ...::...:||..:.|:           
 Worm    94 FLQFIASSRLQDRQWSDEHNAFLFVERAWSQP-----KEFIKTFKTSDYLLHCFGYSEMLQQLIL 153

  Fly   366 ---KIYSTKFNRPQMVVLLP----RLADDTHPATLYMLEVSYTSQHHFWD--FPAL--------- 412
               |..|......|.:|:..    .:.|..:|.:.||......|:  .|.  ||.:         
 Worm   154 RREKKQSADKGPVQFIVIFDLNTVNITDYVNPMSGYMKLWQIRSE--LWQDWFPEMVQRIYLTNP 216

  Fly   413 --------RTTKTECSEEQLNAIDQLIDSTDLECTLRDTQQPRPWAQNDLLPFDALPSIFEQNVM 469
                    :..:...|||.|..|:.:.|.:||......     ||    |:|             
 Worm   217 PRLLGLLWKVARVFLSEENLKRIEIISDKSDLAGKFLP-----PW----LVP------------- 259

  Fly   470 DILERKVIYDNDKEDKMLKDKNFADVFWRVPDPLEEKSKRAAAIVKKLFPLRYSRAWQEKLLAKE 534
                                |.:...|.....|.:|   ...::.:|:....|.:.:|      .
 Worm   260 --------------------KEYGGEFVNTVPPGDE---TGVSVRRKITSADYYKPYQ------H 295

  Fly   535 QAENGV-AVKS-----EPAEK---EIPLPSDGVGLID-------PISDFR------RVLASVHTI 577
            ..|:|: ..||     .||||   :|.:|:....|.|       ..:.||      .|..|:|.|
 Worm   296 YKEHGIDRPKSSHKDVSPAEKFVFKIQVPNGKKLLWDFTASGELQFAIFRGNNRNDLVFPSLHLI 360

  Fly   578 SN 579
            :|
 Worm   361 TN 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ku80NP_609767.2 Ku_N 7..213 CDD:281693
KU80 221..524 CDD:238445 41/248 (17%)
Ku_PK_bind 562..663 CDD:285938 8/31 (26%)
C34C12.6NP_497717.2 SEC14 91..265 CDD:214706 36/219 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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