DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ku80 and Irbp

DIOPT Version :10

Sequence 1:NP_609767.2 Gene:Ku80 / 34930 FlyBaseID:FBgn0041627 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_536773.1 Gene:Irbp / 117419 FlyBaseID:FBgn0011774 Length:631 Species:Drosophila melanogaster


Alignment Length:505 Identity:99/505 - (19%)
Similarity:171/505 - (33%) Gaps:209/505 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 GYMLGGTPVPYDEAVLEPKEPHPPGL-HFFGFIKR-----------NAVP--DEY----FCGESL 332
            |..|....:.|   |.:.:||||... ||...:::           :.:|  |::    |..|.:
  Fly   159 GKKLNNAKIAY---VTDVREPHPSNSNHFQAALQKASDLEGKEFEFHVIPMVDDFDYEPFYKEFI 220

  Fly   333 YLLVHQKHNQSAAVKLDA-------LVRALVSSDRAI-------------------LCWKI-YST 370
            .|        |.|::|||       ::|.:: |||.:                   |...: |..
  Fly   221 TL--------SRAIELDAFQVPDAQMLREIL-SDRKLKQDFLRRCLGHFSFYLGPNLSMSVQYYN 276

  Fly   371 KFNR---PQMVVLLPRLADDTHPATLYMLEV-------SYTSQHHF-------WDFPALRTTKTE 418
            .|.|   |:.|.:|.|  |::...|..::.|       |...:|.:       |....:......
  Fly   277 YFQRRAYPRKVQILRR--DNSVVRTKRVITVQKQKDDGSQDIEHEYQIKVTGGWYTCNVGERDLR 339

  Fly   419 CSEEQLNAIDQLIDSTDLECTLRDTQQPRPWAQNDLLPF---DALPSIFEQNVMDILERKVIYDN 480
            .|.:|||.:             |:..:|    |..||.|   .:||.:                 
  Fly   340 ISMDQLNRV-------------RNLHKP----QMMLLGFKHRSSLPEV----------------- 370

  Fly   481 DKEDKMLKDKNFADVFWRVPDPLEEKSKRAAAIV--KKLFPLRYSRAWQEKLLAKEQAENGVAV- 542
                ..:|..||     ..||.        .:|:  |:||     ||..|:.|.:::    :|: 
  Fly   371 ----SYIKPANF-----MYPDD--------QSIIGSKRLF-----RALWERCLVRDK----IAIC 409

  Fly   543 ----KSEPAEKEIPLPSDGVGLIDPISDFRRVLASVHTISNATERDARFQALAADTRVVIITLLQ 603
                |    .|.||                |.:|.|...:.....|..:::|.......|:.|.:
  Fly   410 LFMCK----RKSIP----------------RYVALVPVEAPDNGEDKNYRSLLCGDGFKIVYLPE 454

  Fly   604 RRKQNIGQLGELITLYRQSCIDFNTFLEYDKFAEELKKIALAKNRSEFWQDVM----VDKQLGPL 664
            .:  :|..|            |...:...:..|:|.|        .||:|.::    ||.|  |.
  Fly   455 AK--HIRHL------------DLQDWNNTENTADEQK--------VEFFQKIIKKLRVDYQ--PN 495

  Fly   665 VLGEPTLD----DELALKAYYT-----IENWVESGAND------MEDVEM 699
            ::.:|:||    :.|||...::     ::|.:::...|      :.|.||
  Fly   496 LINDPSLDALQANLLALSLDFSTDTKGLDNLLDTSQQDKRIEKLLPDYEM 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ku80NP_609767.2 Ku_N 7..213 CDD:427470
KU80 221..524 CDD:238445 59/304 (19%)
Ku_PK_bind 562..>659 CDD:462604 17/100 (17%)
IrbpNP_536773.1 Ku_N 33..256 CDD:427470 24/108 (22%)
KU70 255..546 CDD:238407 75/397 (19%)
HeH 593..624 CDD:403988
Blue background indicates that the domain is not in the aligned region.

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