DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3793 and lcmt1

DIOPT Version :9

Sequence 1:NP_001246038.1 Gene:CG3793 / 34928 FlyBaseID:FBgn0028507 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001016033.1 Gene:lcmt1 / 548787 XenbaseID:XB-GENE-5811952 Length:326 Species:Xenopus tropicalis


Alignment Length:329 Identity:158/329 - (48%)
Similarity:208/329 - (63%) Gaps:17/329 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEPPASAGIAGSTHKFHPCDEAVIATNDDASDCKRCAVRLGYWKDDYIGYFVRN-QERKAPEINR 64
            |..||..|....|     .||||..|.||||.|||.||..|||||.||.||||. :|||||||||
 Frog     1 MSKPAGPGPDSDT-----ADEAVRGTCDDASICKRFAVSAGYWKDPYIQYFVRQAKERKAPEINR 60

  Fly    65 GYFARVKGVEMCVEKFLKKTSGNCQIINLGCGFDTLYFRLRDTAHQVKNFIELDFPTVTARKCYT 129
            ||:|||:||.:.::.||:||..||||||||.|.||.::||:|.....|.:.|:|||.:.|||.|.
 Frog    61 GYYARVQGVHLLLKAFLRKTECNCQIINLGAGLDTTFWRLKDENLLPKKYFEVDFPAIVARKLYN 125

  Fly   130 IKRNKALLARIHD-EDGE-VRLSPTDLHGPSYHLMGVDLRNLDEVDSKLQQAEVDYSLPTIFLAE 192
            ||....|...|.: ..|| :.|....|....|.::|.||||..:::.||::..:|..|||:.:.|
 Frog   126 IKSKPPLSKPIMETHSGESLLLDAHSLDSARYSIIGADLRNPKDMEEKLKKMSLDPQLPTLLVTE 190

  Fly   193 CVLVYIEAQNCRNLLKWIAQKFQAAVFVNYEQVNMNDRFGDVMLNNLRGRGCSLAGVESCLSLDT 257
            |||||:..:...:||:|....|..|:|:|||||||.||||.:|:.||:.|.|:||||::|.||::
 Frog   191 CVLVYMTPEQSASLLQWATNTFTTAMFINYEQVNMMDRFGQIMVENLQRRQCNLAGVDACQSLES 255

  Fly   258 QRNRFKDSGWTGARAWDMVQVYESISAAERQRIERLEMLDEGELLLQLFQHYCLVVAW------- 315
            |..|...:||..|.||:|::||.::...:..|||:||.|||.|||.||..|||  ::|       
 Frog   256 QTERLLSTGWESADAWNMMKVYSNLPQEDVMRIEKLEFLDEKELLEQLLLHYC--ISWATKDSLG 318

  Fly   316 LGVA 319
            ||:|
 Frog   319 LGLA 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3793NP_001246038.1 LCM 22..211 CDD:397957 95/191 (50%)
lcmt1NP_001016033.1 LCM 18..209 CDD:377216 94/190 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 180 1.000 Domainoid score I3458
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41123
Inparanoid 1 1.050 296 1.000 Inparanoid score I2683
OMA 1 1.010 - - QHG53717
OrthoDB 1 1.010 - - D1094856at2759
OrthoFinder 1 1.000 - - FOG0001575
OrthoInspector 1 1.000 - - oto102215
Panther 1 1.100 - - LDO PTHR13600
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2177
SonicParanoid 1 1.000 - - X3234
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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