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Protein Alignment CG3793 and Lcmt1

DIOPT Version :9

Sequence 1:	NP_001246038.1	Gene:	CG3793 / 34928	FlyBaseID:	FBgn0028507	Length:	341	Species:	Drosophila melanogaster
Sequence 2:	NP_955437.2	Gene:	Lcmt1 / 361643	RGDID:	735118	Length:	332	Species:	Rattus norvegicus

Alignment Length:	303	Identity:	151/303 - (49%)
Similarity:	203/303 - (66%)	Gaps:	7/303 - (2%)

- Green bases have known domain annotations that are detailed below.

  Fly    20 DEAVIATNDDASDCKRCAVRLGYWKDDYIGYFVR-NQERKAPEINRGYFARVKGVEMCVEKFLKK 83
            ||.|..|.:|||.|||.||.:|||.|.||.:.|| ::|||||||||||||||.||...::.||:|
  Rat    21 DEGVRGTCEDASLCKRFAVSIGYWHDPYIEHLVRQSKERKAPEINRGYFARVHGVSQLIKAFLRK 85

  Fly    84 TSGNCQIINLGCGFDTLYFRLRDTAHQVKNFIELDFPTVTARKCYTIKRNKALLAR----IHDED 144
            |...|||:|||.|.||.:::|:|.......:.|:|||.:..||.:||| ||.||.|    :|.||
  Rat    86 TECRCQILNLGAGMDTTFWKLKDEGLLPNKYFEVDFPMIVTRKLHTIK-NKPLLFRPIMELHPED 149

  Fly   145 GEVRLSPTDLHGPSYHLMGVDLRNLDEVDSKLQQAEVDYSLPTIFLAECVLVYIEAQNCRNLLKW 209
             .:::....|....|.::|.|||:|.|::.||::..::..|||:.:.||||||:..:...|||||
  Rat   150 -TLQIDSHMLDSKRYAIIGADLRDLSELEEKLKKCNMNTQLPTLLITECVLVYMTPEQSANLLKW 213

  Fly   210 IAQKFQAAVFVNYEQVNMNDRFGDVMLNNLRGRGCSLAGVESCLSLDTQRNRFKDSGWTGARAWD 274
            .|:.|:.|:|:|||||||:||||.:|:.|||.|.|.|||||:|.||::|:.|...:||..|.|.:
  Rat   214 AARSFETAMFINYEQVNMDDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLLNGWETASAVN 278

  Fly   275 MVQVYESISAAERQRIERLEMLDEGELLLQLFQHYCLVVAWLG 317
            |:::|..:..||..|||.||.|||.|||.||.:||||..|..|
  Rat   279 MMELYSGLPRAEVNRIESLEFLDEMELLEQLMRHYCLCWATRG 321

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.