DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3793 and Lcmt2

DIOPT Version :10

Sequence 1:NP_001246038.1 Gene:CG3793 / 34928 FlyBaseID:FBgn0028507 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_808514.2 Gene:Lcmt2 / 329504 MGIID:1353659 Length:686 Species:Mus musculus


Alignment Length:331 Identity:119/331 - (35%)
Similarity:166/331 - (50%) Gaps:22/331 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VIATNDDASDCKRCAVRLGYWKDDYIGYFVRNQERKAPEINRGYFARVKGVEMCVEKFLKKTSG- 86
            |.:|||.:|..||.....||.:|.:....|....|:.|.|:|||:.|.:.|..||..||:.||. 
Mouse    13 VQSTNDSSSLSKRSLAAHGYVRDPFAALLVPGPVRRTPLIHRGYYVRARAVRHCVRAFLELTSAL 77

  Fly    87 ----NCQIINLGCGFDTLYFRLRDTAHQVKNFI-ELDFPTVTARKCYTIKRNKALLA-----RIH 141
                ..||::||.|.|:|||||:......:..: |:|||.|:..|...|:....|.|     :|.
Mouse    78 PSRTRAQILSLGSGSDSLYFRLKAAGLLARAAVWEVDFPDVSRLKAERIEETPELRAQTGPFKIG 142

  Fly   142 DEDGEVRLSPTDLHGPSYHLMGVDLRNLDEVDSKLQQAEVDYSLPTIFLAECVLVYIEAQNCRNL 206
            |....:.....|     |.::|.|||.|..:...|..|.:|.:.||:.|||.||.|:|..:...|
Mouse   143 DSASSLCFESAD-----YRILGADLRELQRLGEALDGAGLDATSPTLLLAEAVLTYLEPSSATAL 202

  Fly   207 LKWIAQKFQAAVFVNYEQVNMNDRFGDVMLNNLRGRGCSLAGVESCLSLDTQRNRFKDSGWTGAR 271
            :.|.||:|..|:||.|||:...|.||.:||.:.:.....|.|:|....:..||.||..:|||...
Mouse   203 IAWAAQRFPDALFVIYEQMQPGDAFGQIMLQHFQRLHSPLHGLELFPVVKAQRQRFLQAGWTACS 267

  Fly   272 AWDMVQVYES-ISAAERQRIERLEMLDEGELLLQLFQHYCLVVAWLGVAFQDIDITCVPVVEELM 335
            |.|:.:.|.. :||.||||:|.||..||.|.......||.::.|..|    || ::..||.|...
Mouse   268 ALDLNEFYRRLLSAEERQRVETLEPFDEYEEWHLKCSHYFILAASRG----DI-LSETPVFEPSE 327

  Fly   336 SSLNID 341
            :|..||
Mouse   328 ASFQID 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3793NP_001246038.1 LCM 22..211 CDD:427692 68/198 (34%)
Lcmt2NP_808514.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 5/9 (56%)
YktD 26..279 CDD:442544 88/257 (34%)
NanM 418..>604 CDD:442289
Blue background indicates that the domain is not in the aligned region.

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