DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gli and LOC688542

DIOPT Version :9

Sequence 1:NP_476602.1 Gene:Gli / 34927 FlyBaseID:FBgn0001987 Length:956 Species:Drosophila melanogaster
Sequence 2:XP_038954018.1 Gene:LOC688542 / 688542 RGDID:1587637 Length:559 Species:Rattus norvegicus


Alignment Length:592 Identity:176/592 - (29%)
Similarity:258/592 - (43%) Gaps:108/592 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 TNYGQVQGFKVYMYDNPDPKSFYRPYHSTVDRVMGECSVFLGIPYALPPTFEGRFKPPRVHRGWQ 203
            |:.|||:|..|::.|            :.:|     ...|||||:|.||....||.||.....|.
  Rat    36 THTGQVRGSLVHVKD------------TDID-----VHTFLGIPFAKPPVGPLRFAPPEAPEPWS 83

  Fly   204 LLQAVDFGPA-CPQPVRYTGA-----TKGIM---DMDEDCLYLNVYSPKTGAGVAQKYPVMVYIH 259
            .::.....|| |.|.....|:     .|.|:   .|.|||||||:|:| |.|......||||:||
  Rat    84 GVRDATSHPAMCLQNDNMMGSEDMKIMKLILPPISMSEDCLYLNIYAP-THAHEGSNLPVMVWIH 147

  Fly   260 GGEFIRGASNLFQGHILASFYDVVVVTLNYRLGALGFLSTGDENSPGNYGILDQAMALRWVYDNI 324
            ||....|.::::.|.:||:..||||||:.||||.|||.|||||::.||:|.|||..|||||..||
  Rat   148 GGALTVGMASMYDGSMLAATEDVVVVTIQYRLGVLGFFSTGDEHARGNWGYLDQVAALRWVQQNI 212

  Fly   325 EFFNGDRNSITLFGPGAGGASAGLLMVAPQTRNIVRRVIAQSG-SALADWALIQDKYRAQNTSRV 388
            ..|.|:.|.:|:||..|||.|....:|:|.::.:....|.:|| ..|.|  ||...  ::...|:
  Rat   213 AHFGGNPNRVTIFGESAGGTSVSSHVVSPMSQGLFHGAIMESGVVVLPD--LISRS--SEMVYRI 273

  Fly   389 LGQLLGCSIESSWKLVNCLRTGRSFYELGNAEFSPQVGSFPWGPVLDHNFT---LPGDDWYEGWR 450
            :..|.||:...|..|:.||| |:|..|                 :||.|..   :|.        
  Rat   274 VANLSGCAAVDSETLMQCLR-GKSEAE-----------------ILDINKVFKIIPA-------- 312

  Fly   451 EKDWRFLTQTPETLIRAGKFNRNIQYMTGVTTQEAAFFVAQNESLSPYYELDGRFFD--QKIREH 513
            ..|..||.:.|:.|:.:..|:| :..:.|:...|..:.:..             .||  |||.|.
  Rat   313 VVDGEFLPKHPQELLASANFHR-VPSIIGINNDEYGWILPM-------------IFDSAQKIEEI 363

  Fly   514 VFRYNYTLNPNGVYEAIKYIY----------TFWPDPNNNTIIRDQYINMLSDLYYRAPVDQMVK 568
            ..:   ||.......|:|.:.          .:..|..:...::.|:..|:.|..:..|..|:..
  Rat   364 TRK---TLPTVLKSTALKMMLPPECGDLLMEEYMGDTEDPKTLQAQFREMMGDFMFVIPALQVAH 425

  Fly   569 LMLEQKVPVYMYVLNTTVEALN--LPQWRKYPHDIERYFLTGAPFMDTEFFPKKEHLQRNMWTDN 631
            .. ....|||.|..........  .|...|..|..|.:.:.|....|.:|    .|      |:.
  Rat   426 FQ-RSHAPVYFYEFQHRSSFFKDVKPPHVKADHGDEVFLVFGYLVGDIKF----PH------TEE 479

  Fly   632 DRNMSHFFMQTYTNFARYGNPTPQQVLGMHFQRAYQGEIRYLNINTTYNSSILLNYRQTECAFWT 696
            :..:|...|:.:.||||:|||..:   |:........:.:||.::...:....|..|:.:  |||
  Rat   480 EELLSRKIMKYWANFARHGNPNSE---GLPHWPVMDHDDQYLQLDIQPSVGRALKARRLK--FWT 539

  Fly   697 QYLPTVI 703
            :.||..|
  Rat   540 KTLPQKI 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GliNP_476602.1 COesterase 134..695 CDD:278561 170/582 (29%)
LOC688542XP_038954018.1 COesterase 30..538 CDD:395084 170/582 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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