DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycE and Ccni

DIOPT Version :10

Sequence 1:NP_001246037.1 Gene:CycE / 34924 FlyBaseID:FBgn0010382 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_001099468.1 Gene:Ccni / 289500 RGDID:1309209 Length:377 Species:Rattus norvegicus


Alignment Length:395 Identity:86/395 - (21%)
Similarity:155/395 - (39%) Gaps:70/395 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   327 AWANAADVWRLMCHRDEQDSRLRSISMLEQHPGLQPRMRAILLDWLIEVCEVYKLHRETFYLAVD 391
            |.:..|.:|::            ::..:..:..:.|..|..::.||.::...:.|:.|||.||..
  Rat    19 AISREAQMWKV------------NVPKIPTNQNVSPSQRDEVIQWLAKLKYQFNLYPETFALASS 71

  Fly   392 YLDRYLHVAHKVQKTHLQLIGITCLFVAAKV--EEIYPPKIGEFAYVTDGACTERDILNHEKILL 454
            .|||:|... |....:|..|.|:|.|:|||.  |:...|.:...|..:...|:..:||..|:|:|
  Rat    72 LLDRFLATV-KAHPKYLNCIAISCFFLAAKTVEEDEKIPVLKVLARDSFCGCSSSEILRMERIIL 135

  Fly   455 QALDWDISPITITGWLGVYMQLNVNNRTPASFSQIGRQKSAEADDAFIYPQFSGFEF--VQTSQL 517
            ..|:||:...|...:|.::..:.|:.|....||               .|:.|..:.  |.|.||
  Rat   136 DKLNWDLHTATPLDFLHIFHAIAVSTRPQLLFS---------------LPRLSPSQHLAVLTKQL 185

  Fly   518 LDLCTLDVGMANYSYSVLAAAAISHTFSREMALRCSGLDW-----QVIQPCARWMEPFFRVISQK 577
            |. |.....:..:..|:||.|.:|....:.:.      ||     :::|................
  Rat   186 LH-CMACNQLLQFKGSMLALAMVSLEMEKLIP------DWLPLTIELLQKAQMDSSQLIHCRELV 243

  Fly   578 APYLQLNEQNEQVSNKFGLGLICPNIVTDDSHIIQTHTTTMDMYDEVLMAQDAAHAMRARIQASP 642
            |.:|...:.:..:::.:....:...:||.|....:.|.:::...|   .::|         .:.|
  Rat   244 AYHLSALQSSLPLNSVYVYRPLKHTLVTCDKGAFKLHPSSISGPD---FSKD---------NSKP 296

  Fly   643 ATALRAPESL-LTPPASS--------HKPDEYLGDEGDETGAR-----SGISSTTTCCNTAASNK 693
            ...:|.|.:. |..||.|        .|.:|...|:..:...|     ||..:..:.|.|..|.:
  Rat   297 EVPVRGPAAFHLHLPAVSGCKHTSAKRKVEEMEVDDLYDGIKRLYNEDSGSENVGSVCGTDLSRQ 361

  Fly   694 GGKSS 698
            .|.:|
  Rat   362 EGHAS 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycENP_001246037.1 CYCLIN_CCNE_rpt1 327..459 CDD:410223 36/133 (27%)
CYCLIN_CCNE_rpt2 463..576 CDD:410224 22/119 (18%)
CcniNP_001099468.1 CYCLIN_CCNI-like 44..142 CDD:410230 33/98 (34%)

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