DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycE and Ccne1

DIOPT Version :9

Sequence 1:NP_001246037.1 Gene:CycE / 34924 FlyBaseID:FBgn0010382 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_001094291.1 Gene:Ccne1 / 25729 RGDID:2294 Length:411 Species:Rattus norvegicus


Alignment Length:474 Identity:175/474 - (36%)
Similarity:244/474 - (51%) Gaps:85/474 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 DSPDSPPSPDRGSKQTPVVVRYAAEQVVTSTVVTQKTEDDDL--LDDSCEDYSYDEDDEDDVEEE 256
            ||.|.....:.|.....|..|.....|    .|..:..|:::  :|.:.:       .:|..:..
  Rat     9 DSKDHSNMKEEGGSDLSVRSRKRKANV----AVFLQDPDEEIAKIDKTVK-------SQDSSQPW 62

  Fly   257 DDDVEIYSSTISPASSGCSQQQAVNGERTPGLPKHQEQIHHPVSDLMINMRTPMSPAVENGLRQC 321
            |||    |:.:.|    ||.....|.|       ...::.:|        :|...|......|..
  Rat    63 DDD----SACVDP----CSFIPTPNKE-------EDNELEYP--------KTAFQPRKIRPPRAS 104

  Fly   322 PLPALAWANAADVWRLMCHRDEQDSRLRSISMLEQHPGLQPRMRAILLDWLIEVCEVYKLHRETF 386
            |||.|.|.|..:|||:|.::::  :.||....|::||.||.||||:|||||:|||||||||||||
  Rat   105 PLPVLNWGNREEVWRIMLNKEK--TYLRDEHFLQRHPLLQARMRAVLLDWLMEVCEVYKLHRETF 167

  Fly   387 YLAVDYLDRYLHVAHKVQKTHLQLIGITCLFVAAKVEEIYPPKIGEFAYVTDGACTERDILNHEK 451
            |||.|:.|||:.....:.||.||||||:.||:|:|:|||||||:.:|||||||||:..:||..|.
  Rat   168 YLAQDFFDRYMASQQNIIKTLLQLIGISALFIASKLEEIYPPKLHQFAYVTDGACSGDEILTMEL 232

  Fly   452 ILLQALDWDISPITITGWLGVYMQLNVNNRTPASFSQIGRQKSAEADDAFIYPQFSGFEFVQTSQ 516
            ::::||.|.:||:||..||.||:|:...|.|                ...:.||:....|||.::
  Rat   233 MMMKALKWRLSPLTIVSWLNVYVQVAYVNDT----------------GEVLMPQYPQQVFVQIAE 281

  Fly   517 LLDLCTLDVGMANYSYSVLAAAAISHTFSREMALRCSGLDWQVIQPCARWMEPFFRVI----SQK 577
            |||||.||||...:.|.||||:|:.|..|.|:..:.||..|..|:.|.:||.||..||    |.|
  Rat   282 LLDLCVLDVGCLEFPYGVLAASALYHFSSLELMQKVSGYQWCDIEKCVKWMVPFAMVIREMGSSK 346

  Fly   578 APYLQLNEQNEQVSNKFGLGLICPNIVTDDSHIIQTHTTTMDMYDEVLMAQDAAHAMRARIQASP 642
            ..:.:                   .:..:|||.|||||.::|:.|:. .|:.|..:.:.||  ||
  Rat   347 LKHFR-------------------GVPMEDSHNIQTHTNSLDLLDKA-QAKKAILSEQNRI--SP 389

  Fly   643 ATALRAPESLLTPPASSHK 661
                 .|..:||||.||.|
  Rat   390 -----PPSGVLTPPHSSKK 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycENP_001246037.1 Cyclin_N 333..462 CDD:278560 74/128 (58%)
Cyclin_C <517..>571 CDD:281044 26/53 (49%)
Ccne1NP_001094291.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..44 8/38 (21%)
CYCLIN_SF 104..240 CDD:424085 79/137 (58%)
CYCLIN_CCNE1_rpt2 244..357 CDD:410284 46/147 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..411 12/30 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340024
Domainoid 1 1.000 156 1.000 Domainoid score I4095
eggNOG 1 0.900 - - E1_COG5024
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H14452
Inparanoid 1 1.050 271 1.000 Inparanoid score I2923
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D993640at2759
OrthoFinder 1 1.000 - - FOG0002994
OrthoInspector 1 1.000 - - otm45307
orthoMCL 1 0.900 - - OOG6_105145
Panther 1 1.100 - - LDO PTHR10177
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2342
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.760

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